Difference between revisions of "RXN0-901"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLC-1-P GLC-1-P] == * smiles: ** C(O)C1(OC(OP(=O)([O-])[O-])C(O)C(O)C(O)1) * inchi key: ** InCh...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] == * direction: ** REVERSIBLE * common name: ** xanthine dehydrogenase * ec numb...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLC-1-P GLC-1-P] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] ==
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* smiles:
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* direction:
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** C(O)C1(OC(OP(=O)([O-])[O-])C(O)C(O)C(O)1)
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** REVERSIBLE
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* inchi key:
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** InChIKey=HXXFSFRBOHSIMQ-VFUOTHLCSA-L
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* common name:
 
* common name:
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** α-D-glucopyranose 1-phosphate
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** xanthine dehydrogenase
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* molecular weight:
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* ec number:
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** 258.121   
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** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
 
* Synonym(s):
 
* Synonym(s):
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** glucose 1-phosphate
 
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** cori ester
 
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** D-glucose 1-phosphate
 
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** glucose-1P
 
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** α-glucose-1-phosphate
 
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** D-glucose-α-1-phosphate
 
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** α-D-glucose-1-P
 
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** D-glucose-1-phosphate
 
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** α-D-glucose 1-phosphate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[XANTHINE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[URATE]][c]
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* [[RXN-16997]]
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* With common name(s):
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* [[RXN-12486]]
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** 1 xanthine[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 urate[c]
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* [[GALACTURIDYLYLTRANS-RXN]]
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* [[GLUC1PURIDYLTRANS-RXN]]
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== Genes associated with this reaction  ==
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* [[PHOSPHOGLUCMUT-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-20_000230]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-20_000210]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
 +
== Pathways  ==
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* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
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** '''8''' reactions found over '''24''' reactions in the full pathway
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* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
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** '''4''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6999]], theophylline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6999 PWY-6999]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5695]], urate biosynthesis/inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538]
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** '''2''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 59-56-3
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* RHEA:
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* BIGG : 33865
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16669 16669]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7091266 7091266]
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** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
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* HMDB : HMDB01586
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q62637 Q62637]
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** [http://www.genome.jp/dbget-bin/www_bget?C00103 C00103]
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** [http://www.uniprot.org/uniprot/P22811 P22811]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/Q12553 Q12553]
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** [http://www.chemspider.com/Chemical-Structure.5441206.html 5441206]
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** [http://www.uniprot.org/uniprot/P08793 P08793]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P10351 P10351]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58601 58601]
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** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
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* METABOLIGHTS : MTBLC58601
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** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
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{{#set: smiles=C(O)C1(OC(OP(=O)([O-])[O-])C(O)C(O)C(O)1)}}
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** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
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{{#set: inchi key=InChIKey=HXXFSFRBOHSIMQ-VFUOTHLCSA-L}}
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** [http://www.uniprot.org/uniprot/P47990 P47990]
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{{#set: common name=&alpha;-D-glucopyranose 1-phosphate}}
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** [http://www.uniprot.org/uniprot/P47989 P47989]
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{{#set: molecular weight=258.121    }}
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** [http://www.uniprot.org/uniprot/Q00519 Q00519]
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{{#set: common name=glucose 1-phosphate|cori ester|D-glucose 1-phosphate|glucose-1P|&alpha;-glucose-1-phosphate|D-glucose-&alpha;-1-phosphate|&alpha;-D-glucose-1-P|D-glucose-1-phosphate|&alpha;-D-glucose 1-phosphate}}
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{{#set: direction=REVERSIBLE}}
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{{#set: consumed or produced by=RXN-16997|RXN-12486|GALACTURIDYLYLTRANS-RXN|GLUC1PURIDYLTRANS-RXN|PHOSPHOGLUCMUT-RXN}}
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{{#set: common name=xanthine dehydrogenase}}
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{{#set: ec number=EC-1.17.1.4}}
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{{#set: gene associated=Ec-20_000230|Ec-20_000210}}
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{{#set: in pathway=PWY-5497|SALVADEHYPOX-PWY|P164-PWY|PWY-6596|PWY-6607|PWY-6606|PWY-6999|PWY-6608|PWY-5695|PWY-6538}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:50, 21 March 2018

Reaction RXN0-901

  • direction:
    • REVERSIBLE
  • common name:
    • xanthine dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 xanthine[c] + 1 H2O[c] + 1 NAD+[c] <=> 1 NADH[c] + 1 H+[c] + 1 urate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 8 reactions found over 24 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II: SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 4 reactions found over 17 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-6607, guanosine nucleotides degradation I: PWY-6607
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II: PWY-6606
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6999, theophylline degradation: PWY-6999
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5695, urate biosynthesis/inosine 5'-phosphate degradation: PWY-5695
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6538, caffeine degradation III (bacteria, via demethylation): PWY-6538
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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