Difference between revisions of "AGMATINE-DEIMINASE-RXN"

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(Created page with "Category:Gene == Gene Ec-04_003010 == * left end position: ** 3099445 * transcription direction: ** POSITIVE * right end position: ** 3105797 * centisome position: ** 47.5...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** A...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
== Gene Ec-04_003010 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] ==
* left end position:
+
* direction:
** 3099445
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** LEFT-TO-RIGHT
* transcription direction:
+
* common name:
** POSITIVE
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** Agmatine deiminase
* right end position:
+
* ec number:
** 3105797
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** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
* centisome position:
+
** 47.59699   
+
 
* Synonym(s):
 
* Synonym(s):
** Esi_0201_0031
 
** Esi0201_0031
 
  
== Reactions associated ==
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== Reaction Formula ==
* [[PEPTIDYLPROLYL-ISOMERASE-RXN]]
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* With identifiers:
** esiliculosus_genome
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** 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-597]][c]
***go-term
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* With common name(s):
== Pathways associated ==
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** 1 agmatine[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 N-carbamoylputrescine[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-02_001540]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
{{#set: left end position=3099445}}
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* RHEA:
{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
{{#set: right end position=3105797}}
+
* LIGAND-RXN:
{{#set: centisome position=47.59699    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
{{#set: common name=Esi_0201_0031|Esi0201_0031}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: reaction associated=PEPTIDYLPROLYL-ISOMERASE-RXN}}
+
{{#set: common name=Agmatine deiminase}}
 +
{{#set: ec number=EC-3.5.3.12}}
 +
{{#set: gene associated=Ec-02_001540}}
 +
{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:52, 21 March 2018

Reaction AGMATINE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Agmatine deiminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 agmatine[c] + 1 H2O[c] => 1 ammonium[c] + 1 N-carbamoylputrescine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-43, putrescine biosynthesis II: PWY-43
    • 2 reactions found over 3 reactions in the full pathway
  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): ARGDEG-III-PWY
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links