Difference between revisions of "AGMATINE-DEIMINASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9635 RXN-9635] == * direction: ** LEFT-TO-RIGHT * common name: ** trans-octadec-2-enoyl-[acyl-c...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** A...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9635 RXN-9635] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trans-octadec-2-enoyl-[acyl-carrier-protein] reductase
+
** Agmatine deiminase
−
** Glucose/ribitol dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.9 EC-1.3.1.9]
+
** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADH]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Stearoyl-ACPs]][c] '''+''' 1 [[NAD]][c]
+
** 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-597]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADH[c] '''+''' 1 a trans-octadec-2-enoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a stearoyl-[acp][c] '''+''' 1 NAD+[c]
+
** 1 agmatine[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 N-carbamoylputrescine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-27_002470]]
+
* Gene: [[Ec-02_001540]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
+
* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trans-octadec-2-enoyl-[acyl-carrier-protein] reductase}}
+
{{#set: common name=Agmatine deiminase}}
−
{{#set: common name=Glucose/ribitol dehydrogenase}}
+
{{#set: ec number=EC-3.5.3.12}}
−
{{#set: ec number=EC-1.3.1.9}}
+
{{#set: gene associated=Ec-02_001540}}
−
{{#set: gene associated=Ec-27_002470}}
+
{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
−
{{#set: in pathway=PWY-5989}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:52, 21 March 2018

Reaction AGMATINE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Agmatine deiminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 agmatine[c] + 1 H2O[c] => 1 ammonium[c] + 1 N-carbamoylputrescine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-43, putrescine biosynthesis II: PWY-43
    • 2 reactions found over 3 reactions in the full pathway
  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): ARGDEG-III-PWY
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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