Difference between revisions of "Ec-09 002720"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** A...")
(Created page with "Category:Gene == Gene Ec-09_002720 == * left end position: ** 3109714 * transcription direction: ** POSITIVE * right end position: ** 3116814 * centisome position: ** 55.4...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] ==
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== Gene Ec-09_002720 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3109714
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* common name:
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* transcription direction:
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** Agmatine deiminase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
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** 3116814
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* centisome position:
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** 55.400406   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0171_0046
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** Esi0171_0046
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[CYTOCHROME-B5-REDUCTASE-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[AGMATHINE]][c] '''=>''' 1 [[CPD-597]][c] '''+''' 1 [[AMMONIUM]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 H2O[c] '''+''' 1 agmatine[c] '''=>''' 1 N-carbamoylputrescine[c] '''+''' 1 ammonium[c]
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* Reaction: [[RXN-11195]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-02_001540]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3109714}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3116814}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
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{{#set: centisome position=55.400406    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0171_0046|Esi0171_0046}}
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{{#set: common name=Agmatine deiminase}}
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{{#set: reaction associated=CYTOCHROME-B5-REDUCTASE-RXN|RXN-11195}}
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{{#set: ec number=EC-3.5.3.12}}
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{{#set: gene associated=Ec-02_001540}}
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{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:53, 21 March 2018

Gene Ec-09_002720

  • left end position:
    • 3109714
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3116814
  • centisome position:
    • 55.400406
  • Synonym(s):
    • Esi_0171_0046
    • Esi0171_0046

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-09_002720&oldid=30008"