Difference between revisions of "RXN-8988"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETA-UREIDOPROPIONASE-RXN BETA-UREIDOPROPIONASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number:...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8988 RXN-8988] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinate--CoA ligase (GDP-fo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETA-UREIDOPROPIONASE-RXN BETA-UREIDOPROPIONASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8988 RXN-8988] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Succinate--CoA ligase (GDP-forming), alpha subunit
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.1.6 EC-3.5.1.6]
+
** [http://enzyme.expasy.org/EC/6.2.1.4 EC-6.2.1.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[3-UREIDO-PROPIONATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[B-ALANINE]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 1 [[ITACONATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[CPD-1137]][c] '''+''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 2 H+[c] '''+''' 1 3-ureidopropanoate[c] '''=>''' 1 CO2[c] '''+''' 1 β-alanine[c] '''+''' 1 ammonium[c]
+
** 1 itaconate[c] '''+''' 1 coenzyme A[c] '''+''' 1 GTP[c] '''=>''' 1 itaconyl-CoA[c] '''+''' 1 GDP[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-16_003010]]
+
* Gene: [[Ec-10_000030]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-3982]], uracil degradation I (reductive): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3982 PWY-3982]
+
* [[PWY-5749]], itaconate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5749 PWY-5749]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11184 11184]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00905 R00905]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02405 R02405]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.5.1.6}}
+
{{#set: common name=Succinate--CoA ligase (GDP-forming), alpha subunit}}
−
{{#set: gene associated=Ec-16_003010}}
+
{{#set: ec number=EC-6.2.1.4}}
−
{{#set: in pathway=PWY-3982}}
+
{{#set: gene associated=Ec-10_000030}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-5749}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=aragem}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:53, 21 March 2018

Reaction RXN-8988

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Succinate--CoA ligase (GDP-forming), alpha subunit
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 itaconate[c] + 1 coenzyme A[c] + 1 GTP[c] => 1 itaconyl-CoA[c] + 1 GDP[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5749, itaconate degradation: PWY-5749
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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