Difference between revisions of "C5"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** A...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C5 C5] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C5 C5] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C
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* inchi key:
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** InChIKey=PNWZQTONLRRPST-KLDRQJOASA-J
 
* common name:
 
* common name:
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** Agmatine deiminase
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** undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
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** 1713.036   
 
* Synonym(s):
 
* Synonym(s):
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** N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanyl-D-alanine-diphosphoundecaprenol
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** a peptidoglycan with cleaved N-acetyl-glucosamine
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** lipid intermediate I
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** undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide
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** lipid I
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-597]][c]
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* [[PHOSNACMURPENTATRANS-RXN]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 agmatine[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 N-carbamoylputrescine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-02_001540]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=52940090 52940090]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=61387 61387]
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{{#set: direction=LEFT-TO-RIGHT}}
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* BIGG : 46787
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{{#set: common name=Agmatine deiminase}}
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* LIGAND-CPD:
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{{#set: ec number=EC-3.5.3.12}}
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** [http://www.genome.jp/dbget-bin/www_bget?C05897 C05897]
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{{#set: gene associated=Ec-02_001540}}
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C}}
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{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
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{{#set: inchi key=InChIKey=PNWZQTONLRRPST-KLDRQJOASA-J}}
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{{#set: reconstruction category=annotation}}
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{{#set: common name=undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: molecular weight=1713.036    }}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanyl-D-alanine-diphosphoundecaprenol|a peptidoglycan with cleaved N-acetyl-glucosamine|lipid intermediate I|undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide|lipid I}}
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{{#set: produced by=PHOSNACMURPENTATRANS-RXN}}

Latest revision as of 19:53, 21 March 2018

Metabolite C5

  • smiles:
    • CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C
  • inchi key:
    • InChIKey=PNWZQTONLRRPST-KLDRQJOASA-J
  • common name:
    • undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
  • molecular weight:
    • 1713.036
  • Synonym(s):
    • N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanyl-D-alanine-diphosphoundecaprenol
    • a peptidoglycan with cleaved N-acetyl-glucosamine
    • lipid intermediate I
    • undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide
    • lipid I

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C" cannot be used as a page name in this wiki.



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