Difference between revisions of "4.2.99.18-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMATE-SYNTHASE-FERREDOXIN-RXN] == * direction: ** LEFT-TO-RIG...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** DNA-(apurinic or ap...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN GLUTAMATE-SYNTHASE-FERREDOXIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glutamate synthase (ferredoxin-dependent)
+
** DNA-(apurinic or apyrimidinic site) lyase
−
** Aldolase-type TIM barrel
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.4.7.1 EC-1.4.7.1]
+
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLN]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 2 [[GLT]][c]
+
** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[3-terminal-unsaturated-sugars]][c] '''+''' 1 [[5-Phosphopolynucleotides]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamine[c] '''+''' 1 2-oxoglutarate[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 2 L-glutamate[c]
+
** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 a 3'-terminal unsaturated sugar[c] '''+''' 1 a 5'-phosphopolynucleotide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-00_000720]]
+
* Gene: [[Ec-01_006350]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: GO-TERM
−
* [[Ec-27_004970]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-26_004630]]
+
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6964]], ammonia assimilation cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6964 PWY-6964]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-4341]], L-glutamate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4341 PWY-4341]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00021 R00021]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P23225 P23225]
+
** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
−
** [http://www.uniprot.org/uniprot/O67512 O67512]
+
** [http://www.uniprot.org/uniprot/P28352 P28352]
−
** [http://www.uniprot.org/uniprot/P96218 P96218]
+
** [http://www.uniprot.org/uniprot/Q58829 Q58829]
−
** [http://www.uniprot.org/uniprot/Q06434 Q06434]
+
** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
−
** [http://www.uniprot.org/uniprot/Q43081 Q43081]
+
** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
−
** [http://www.uniprot.org/uniprot/P55037 P55037]
+
** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
−
** [http://www.uniprot.org/uniprot/Q43155 Q43155]
+
** [http://www.uniprot.org/uniprot/P44319 P44319]
−
** [http://www.uniprot.org/uniprot/Q7M242 Q7M242]
+
** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
−
** [http://www.uniprot.org/uniprot/P51375 P51375]
+
** [http://www.uniprot.org/uniprot/P04418 P04418]
−
** [http://www.uniprot.org/uniprot/P55038 P55038]
+
** [http://www.uniprot.org/uniprot/P27695 P27695]
−
** [http://www.uniprot.org/uniprot/Q9SLM4 Q9SLM4]
+
** [http://www.uniprot.org/uniprot/P23196 P23196]
−
** [http://www.uniprot.org/uniprot/Q08258 Q08258]
+
** [http://www.uniprot.org/uniprot/P22936 P22936]
−
** [http://www.uniprot.org/uniprot/O49154 O49154]
+
** [http://www.uniprot.org/uniprot/P43138 P43138]
−
** [http://www.uniprot.org/uniprot/O19906 O19906]
+
** [http://www.uniprot.org/uniprot/P95945 P95945]
 +
** [http://www.uniprot.org/uniprot/P50525 P50525]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glutamate synthase (ferredoxin-dependent)}}
+
{{#set: common name=DNA-(apurinic or apyrimidinic site) lyase}}
−
{{#set: common name=Aldolase-type TIM barrel}}
+
{{#set: ec number=EC-4.2.99.18}}
−
{{#set: ec number=EC-1.4.7.1}}
+
{{#set: gene associated=Ec-01_006350}}
−
{{#set: gene associated=Ec-00_000720|Ec-27_004970|Ec-26_004630}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-6964|PWY-4341|PWY-6549}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:54, 21 March 2018

Reaction 4.2.99.18-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • DNA-(apurinic or apyrimidinic site) lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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