Difference between revisions of "Ec-14 003590"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYCLOARTENOL-SYNTHASE-RXN CYCLOARTENOL-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Gene == Gene Ec-14_003590 == * left end position: ** 3289648 * transcription direction: ** NEGATIVE * right end position: ** 3304208 * centisome position: ** 50.1...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYCLOARTENOL-SYNTHASE-RXN CYCLOARTENOL-SYNTHASE-RXN] ==
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== Gene Ec-14_003590 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3289648
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* common name:
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* transcription direction:
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** Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
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** NEGATIVE
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** Prenyltransferase/squalene oxidase
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* right end position:
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* ec number:
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** 3304208
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** [http://enzyme.expasy.org/EC/5.4.99.8 EC-5.4.99.8]
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* centisome position:
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** 50.143803   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0206_0035
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** Esi0206_0035
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** PAO1
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-13398]]
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** 1 [[EPOXYSQUALENE]][c] '''=>''' 1 [[CYCLOARTENOL]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 (3S)-2,3-epoxy-2,3-dihydrosqualene[c] '''=>''' 1 cycloartenol[c]
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* Reaction: [[RXN-17252]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-7676]]
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* [[Ec-00_010980]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: go-term
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***EC-NUMBER
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* Reaction: [[RXN-7677]]
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* [[Ec-07_006170]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: go-term
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***EC-NUMBER
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* Reaction: [[RXN-7740]]
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-7154]], ergosterol biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7154 PWY-7154]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7155 PWY-7155]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6115]], avenacin biosynthesis, initial reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6115 PWY-6115]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6109]], mangrove triterpenoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6109 PWY-6109]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-2541]], plant sterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
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** '''10''' reactions found over '''36''' reactions in the full pathway
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* [[PWY-6098]], diploterol and cycloartenol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-5068]]
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* [[PWY-5098]]
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* [[PWY-6927]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3289648}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21311 21311]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3304208}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03200 R03200]
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{{#set: centisome position=50.143803    }}
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* UNIPROT:
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{{#set: common name=Esi_0206_0035|Esi0206_0035|PAO1}}
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** [http://www.uniprot.org/uniprot/O23909 O23909]
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{{#set: reaction associated=RXN-13398|RXN-17252|RXN-7676|RXN-7677|RXN-7740}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-5068|PWY-5098|PWY-6927}}
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{{#set: common name=Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid}}
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{{#set: common name=Prenyltransferase/squalene oxidase}}
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{{#set: ec number=EC-5.4.99.8}}
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{{#set: gene associated=Ec-00_010980|Ec-07_006170}}
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{{#set: in pathway=PWY-7154|PWY-7155|PWY-6115|PWY-6109|PWY-2541|PWY-6098}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:54, 21 March 2018

Gene Ec-14_003590

  • left end position:
    • 3289648
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 3304208
  • centisome position:
    • 50.143803
  • Synonym(s):
    • Esi_0206_0035
    • Esi0206_0035
    • PAO1

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-14_003590&oldid=30118"