Difference between revisions of "RXN-7682"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMO-I-CIT HOMO-I-CIT] == * smiles: ** C(CC(=O)[O-])C(C(=O)[O-])C(O)C(=O)[O-] * inchi key: ** I...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7682 RXN-7682] == * direction: ** LEFT-TO-RIGHT * common name: ** xanthine dehydrogenase * ec n...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMO-I-CIT HOMO-I-CIT] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7682 RXN-7682] ==
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* smiles:
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* direction:
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** C(CC(=O)[O-])C(C(=O)[O-])C(O)C(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=OEJZZCGRGVFWHK-WVZVXSGGSA-K
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* common name:
 
* common name:
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** (1R,2S)-homoisocitrate
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** xanthine dehydrogenase
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* molecular weight:
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* ec number:
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** 203.128   
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** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
 
* Synonym(s):
 
* Synonym(s):
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** (-)-threo-isohomocitrate
 
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** (-)-1-hydroxy-1,2,4-butanetricarboxylate
 
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** homo-I-cit
 
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** 1-hydroxy-1,2,4-butanetricarboxylate
 
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** 2-hydroxy-3-carboxyadipate
 
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** homo-iso-citrate
 
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** 1-(R)-hydroxy-2-(S)-1,2,4-butanetricarboxylic acid
 
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** 1-hydroxybutane-1,2,4-tricarboxylate
 
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** (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate
 
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** homoisocitrate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[HOMOACONITATE-HYDRATASE-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[HYPOXANTHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[XANTHINE]][c] '''+''' 1 [[PROTON]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-13722]]
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** 1 NAD+[c] '''+''' 1 hypoxanthine[c] '''+''' 1 H2O[c] '''=>''' 1 NADH[c] '''+''' 1 xanthine[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-20_000210]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-20_000230]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
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** '''4''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5459812 5459812]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24670 24670]
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* CHEMSPIDER:
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* LIGAND-RXN:
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** [http://www.chemspider.com/Chemical-Structure.4573580.html 4573580]
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** [http://www.genome.jp/dbget-bin/www_bget?R01768 R01768]
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* CHEBI:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15404 15404]
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{{#set: common name=xanthine dehydrogenase}}
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* LIGAND-CPD:
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{{#set: ec number=EC-1.17.1.4}}
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** [http://www.genome.jp/dbget-bin/www_bget?C05662 C05662]
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{{#set: gene associated=Ec-20_000210|Ec-20_000230}}
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{{#set: smiles=C(CC(=O)[O-])C(C(=O)[O-])C(O)C(=O)[O-]}}
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{{#set: in pathway=P164-PWY|PWY-6596|SALVADEHYPOX-PWY}}
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{{#set: inchi key=InChIKey=OEJZZCGRGVFWHK-WVZVXSGGSA-K}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: common name=(1R,2S)-homoisocitrate}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: molecular weight=203.128    }}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=(-)-threo-isohomocitrate|(-)-1-hydroxy-1,2,4-butanetricarboxylate|homo-I-cit|1-hydroxy-1,2,4-butanetricarboxylate|2-hydroxy-3-carboxyadipate|homo-iso-citrate|1-(R)-hydroxy-2-(S)-1,2,4-butanetricarboxylic acid|1-hydroxybutane-1,2,4-tricarboxylate|(1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate|homoisocitrate}}
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{{#set: produced by=HOMOACONITATE-HYDRATASE-RXN}}
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{{#set: consumed or produced by=RXN-13722}}
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Latest revision as of 19:54, 21 March 2018

Reaction RXN-7682

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • xanthine dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 hypoxanthine[c] + 1 H2O[c] => 1 NADH[c] + 1 xanthine[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 4 reactions found over 17 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 6 reactions found over 8 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II: SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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