Difference between revisions of "RXN-16415"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAMKIN-RXN PYRAMKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxamine kinase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16415 RXN-16415] == * direction: ** REVERSIBLE * common name: ** long chain acyl-coA synthetase...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAMKIN-RXN PYRAMKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16415 RXN-16415] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Pyridoxamine kinase
+
** long chain acyl-coA synthetase
 +
** long chain acyl-CoA synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PYRIDOXAMINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[Very-long-chain-fatty-acids]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[VERY-LONG-CHAIN-FATTY-ACYL-COA]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 pyridoxamine[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 pyridoxamine 5'-phosphate[c]
+
** 1 coenzyme A[c] '''+''' 1 a very-long-chain fatty acid[c] '''+''' 1 ATP[c] '''<=>''' 1 diphosphate[c] '''+''' 1 a very long chain fatty acyl-CoA[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-02_001230]]
+
* Gene: [[Ec-03_003710]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-aragem]]
+
* Gene: [[Ec-12_008720]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-01_001560]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-02_006430]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25104 25104]
+
{{#set: common name=long chain acyl-coA synthetase}}
−
* LIGAND-RXN:
+
{{#set: common name=long chain acyl-CoA synthetase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493]
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: gene associated=Ec-03_003710|Ec-12_008720|Ec-01_001560|Ec-02_006430}}
−
{{#set: common name=Pyridoxamine kinase}}
+
{{#set: in pathway=}}
−
{{#set: ec number=EC-2.7.1.35}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: gene associated=Ec-02_001230}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: in pathway=PWY-7204|PLPSAL-PWY}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:55, 21 March 2018

Reaction RXN-16415

  • direction:
    • REVERSIBLE
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16415&oldid=30249"