Difference between revisions of "Ec-02 006350"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Methionine...")
 
(Created page with "Category:Gene == Gene Ec-02_006350 == * left end position: ** 6446425 * transcription direction: ** POSITIVE * right end position: ** 6447282 * centisome position: ** 98.7...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] ==
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== Gene Ec-02_006350 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 6446425
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* common name:
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* transcription direction:
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** Methionine synthase
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** POSITIVE
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** Homocysteine S-methyltransferase
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* right end position:
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* ec number:
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** 6447282
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** [http://enzyme.expasy.org/EC/2.1.1.13 EC-2.1.1.13]
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* centisome position:
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** 98.75354   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0355_0019
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** Esi0355_0019
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[NADH-DEHYDROG-A-RXN]]
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** 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[THF-GLU-N]][c] '''+''' 1 [[MET]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 an N5-methyl-tetrahydrofolate[c] '''+''' 1 L-homocysteine[c] '''=>''' 1 a tetrahydrofolate[c] '''+''' 1 L-methionine[c]
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* Reaction: [[NADH-DEHYDROGENASE-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN0-5330]]
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* [[Ec-06_000980]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: go-term
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***EC-NUMBER
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== Pathways associated ==
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* [[Ec-06_000970]]
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* [[PWY-6692]]
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** ESILICULOSUS_GENOME
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* [[PWY-3781]]
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***EC-NUMBER
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* [[PWY-7269]]
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== Pathways ==
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* [[PWY-7279]]
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* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
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* [[PWY0-1567]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5083]]
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* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
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* [[PWY0-1335]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY0-1334]]
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* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
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* [[PWY0-1568]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4302]]
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine: [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLHOMOCYSCAT-PWY ADENOSYLHOMOCYSCAT-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=6446425}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11172 11172]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=6447282}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
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{{#set: centisome position=98.75354    }}
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* UNIPROT:
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{{#set: common name=Esi_0355_0019|Esi0355_0019}}
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** [http://www.uniprot.org/uniprot/Q57195 Q57195]
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{{#set: reaction associated=NADH-DEHYDROG-A-RXN|NADH-DEHYDROGENASE-RXN|RXN0-5330}}
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** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
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{{#set: pathway associated=PWY-6692|PWY-3781|PWY-7269|PWY-7279|PWY0-1567|PWY-5083|PWY0-1335|PWY0-1334|PWY0-1568|PWY-4302}}
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** [http://www.uniprot.org/uniprot/O33259 O33259]
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** [http://www.uniprot.org/uniprot/Q55786 Q55786]
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** [http://www.uniprot.org/uniprot/Q09582 Q09582]
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** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
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** [http://www.uniprot.org/uniprot/P13009 P13009]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Methionine synthase}}
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{{#set: common name=Homocysteine S-methyltransferase}}
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{{#set: ec number=EC-2.1.1.13}}
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{{#set: gene associated=Ec-06_000980|Ec-06_000970}}
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{{#set: in pathway=PWY-3841|HOMOSER-METSYN-PWY|1CMET2-PWY|PWY-2201|HSERMETANA-PWY|ADENOSYLHOMOCYSCAT-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:56, 21 March 2018

Gene Ec-02_006350

  • left end position:
    • 6446425
  • transcription direction:
    • POSITIVE
  • right end position:
    • 6447282
  • centisome position:
    • 98.75354
  • Synonym(s):
    • Esi_0355_0019
    • Esi0355_0019

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-02_006350&oldid=30384"