Difference between revisions of "PEPCARBOX-RXN"

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(Created page with "Category:Gene == Gene Ec-08_002720 == * left end position: ** 2539920 * transcription direction: ** NEGATIVE * right end position: ** 2553693 * centisome position: ** 37.9...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoenolpyruvate...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-08_002720 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN] ==
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* left end position:
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* direction:
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** 2539920
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Phosphoenolpyruvate carboxylase
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* right end position:
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* ec number:
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** 2553693
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** [http://enzyme.expasy.org/EC/4.1.1.31 EC-4.1.1.31]
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* centisome position:
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** 37.925865   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0007_0222
 
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** Esi0007_0222
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[2.4.1.101-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]
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***ec-number
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* With common name(s):
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* [[2.4.1.223-RXN]]
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** 1 phosphoenolpyruvate[c] '''+''' 1 hydrogen carbonate[c] '''=>''' 1 oxaloacetate[c] '''+''' 1 phosphate[c]
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** esiliculosus_genome
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***go-term
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-7426]]
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* Gene: [[Ec-28_003470]]
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* [[PWY-6558]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4429 PWYQT-4429]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6146 PWY-6146]
 +
** '''9''' reactions found over '''16''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''8''' reactions found over '''16''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2539920}}
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* LIGAND-RXN:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345]
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{{#set: right end position=2553693}}
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* UNIPROT:
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{{#set: centisome position=37.925865    }}
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** [http://www.uniprot.org/uniprot/P28594 P28594]
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{{#set: common name=Esi_0007_0222|Esi0007_0222}}
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** [http://www.uniprot.org/uniprot/P43920 P43920]
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{{#set: reaction associated=2.4.1.101-RXN|2.4.1.223-RXN}}
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** [http://www.uniprot.org/uniprot/P29195 P29195]
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{{#set: pathway associated=PWY-7426|PWY-6558}}
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** [http://www.uniprot.org/uniprot/P51059 P51059]
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** [http://www.uniprot.org/uniprot/P00864 P00864]
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** [http://www.uniprot.org/uniprot/P12880 P12880]
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** [http://www.uniprot.org/uniprot/P10490 P10490]
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** [http://www.uniprot.org/uniprot/P16097 P16097]
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** [http://www.uniprot.org/uniprot/P27154 P27154]
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** [http://www.uniprot.org/uniprot/P06516 P06516]
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** [http://www.uniprot.org/uniprot/Q43267 Q43267]
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** [http://www.uniprot.org/uniprot/Q41197 Q41197]
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** [http://www.uniprot.org/uniprot/P29194 P29194]
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** [http://www.uniprot.org/uniprot/P30694 P30694]
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** [http://www.uniprot.org/uniprot/P15804 P15804]
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** [http://www.uniprot.org/uniprot/Q43268 Q43268]
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** [http://www.uniprot.org/uniprot/Q01647 Q01647]
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** [http://www.uniprot.org/uniprot/Q01648 Q01648]
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** [http://www.uniprot.org/uniprot/Q02735 Q02735]
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** [http://www.uniprot.org/uniprot/Q02909 Q02909]
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** [http://www.uniprot.org/uniprot/Q42730 Q42730]
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** [http://www.uniprot.org/uniprot/Q41198 Q41198]
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** [http://www.uniprot.org/uniprot/P51063 P51063]
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** [http://www.uniprot.org/uniprot/Q40103 Q40103]
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** [http://www.uniprot.org/uniprot/Q40104 Q40104]
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** [http://www.uniprot.org/uniprot/Q40105 Q40105]
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** [http://www.uniprot.org/uniprot/Q40102 Q40102]
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** [http://www.uniprot.org/uniprot/Q41836 Q41836]
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** [http://www.uniprot.org/uniprot/O22118 O22118]
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** [http://www.uniprot.org/uniprot/O22119 O22119]
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** [http://www.uniprot.org/uniprot/O48623 O48623]
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** [http://www.uniprot.org/uniprot/Q42634 Q42634]
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** [http://www.uniprot.org/uniprot/O23946 O23946]
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** [http://www.uniprot.org/uniprot/O23947 O23947]
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** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Phosphoenolpyruvate carboxylase}}
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{{#set: ec number=EC-4.1.1.31}}
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{{#set: gene associated=Ec-28_003470}}
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{{#set: in pathway=PWY-5913|PWY-1622|PWYQT-4429|PWY-7115|PWY-241|P23-PWY|PWY-7117|PWY-6549|PWY-6142|PWY-7124|PWY-6146|FERMENTATION-PWY}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:57, 21 March 2018

Reaction PEPCARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphoenolpyruvate carboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic): PWYQT-4429
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 4 reactions found over 5 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-6146, Methanobacterium thermoautotrophicum biosynthetic metabolism: PWY-6146
    • 9 reactions found over 16 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 8 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PEPCARBOX-RXN&oldid=30577"