Difference between revisions of "SHIKIMATE-5-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** protoporphyrinogen oxidase, putative chloroplast precursor
+
** shikimate 3-dehydrogenase (NADP+)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
+
** [http://enzyme.expasy.org/EC/1.1.1.25 EC-1.1.1.25]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[SHIKIMATE]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 3 oxygen[c] '''+''' 1 protoporphyrinogen IX[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
+
** 1 3-dehydroshikimate[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 shikimate[c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-25_003100]]
+
* Gene: [[Ec-02_006010]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 39: Line 33:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P50336 P50336]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
+
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
−
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
+
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
−
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
+
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
−
** [http://www.uniprot.org/uniprot/P51175 P51175]
+
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
−
** [http://www.uniprot.org/uniprot/O24163 O24163]
+
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
−
** [http://www.uniprot.org/uniprot/O24164 O24164]
+
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
−
** [http://www.uniprot.org/uniprot/O64384 O64384]
+
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
−
** [http://www.uniprot.org/uniprot/O64385 O64385]
+
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
 +
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
 +
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
 +
** [http://www.uniprot.org/uniprot/P15770 P15770]
 +
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 +
** [http://www.uniprot.org/uniprot/O65917 O65917]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=protoporphyrinogen oxidase, putative chloroplast precursor}}
+
{{#set: common name=shikimate 3-dehydrogenase (NADP+)}}
−
{{#set: ec number=EC-1.3.3.4}}
+
{{#set: ec number=EC-1.1.1.25}}
−
{{#set: gene associated=Ec-25_003100}}
+
{{#set: gene associated=Ec-02_006010}}
−
{{#set: in pathway=PWY0-1415|PWY-7159|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II}}
+
{{#set: in pathway=PWY-6163}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:58, 21 March 2018

Reaction SHIKIMATE-5-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • shikimate 3-dehydrogenase (NADP+)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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