Difference between revisions of "Manual"

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Latest revision as of 20:02, 21 March 2018

 Common nameEc numberReconstruction categoryReconstruction toolReconstruction sourceReconstruction commentGene associatedIn pathway
Biomass rxnManualManual-2 biomass rxnForfbaNone
Exchange BIOMASSManualManual-2 biomass rxnExchange biomass to boundary
ExchangeSeed ADENOSYLCOBALAMINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed AMMONIAManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed BIOTINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CA+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CARBON-DIOXIDEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CL-ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CO+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed COB-I-ALAMINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CPD-3ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CPD-315ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CU+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CU+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed EDTAManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed FE+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed FE+3ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed K+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed LightManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed MG+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed MN+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed NA+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed NITRATEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed OXYGEN-MOLECULEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed PROTONManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed SULFATEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed THIAMINEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed WATERManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed ZN+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
R07063ManualManual-1 keggrxns to addReaction from kegg for the production of cpd-8117 (gamma-linolenate)
R07861ManualManual-1 keggrxns to addReaction from kegg for the production of cpd-12653 (stearidonate)
R08184ManualManual-1 keggrxns to addReaction from kegg for the production of docosanoate
R08190ManualManual-1 keggrxns to addReaction from kegg for the production of eicosadienoates
RXN-14146EC-4.1.2ManualManual-2 cycrxns to addReaction added for curationEc-11 002460
RXN-1501 METACYC18.5ManualManual-1 cycrxns to addReaction from metacyc 18.5 to produce linolenic acid. reaction phospholipase-a2-rxn deleted in return because implies linolenic acid compound class onlyEc-21 005150
Ec-04 004650
RXN-15490ManualManual-2 lightrxns to addExchange reaction for light
RXN-8349 PLANTCYCManualManual-1 cycrxns to addReaction from plantcyc20.5
Transport BIOMASSManualManual-2 biomass rxnTransport biomass to external compartment
TransportSeed ADENOSYLCOBALAMINManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed AMMONIAManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed BIOTINManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CA+2ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CARBON-DIOXIDEManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CL-ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CO+2ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed COB-I-ALAMINManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CPD-3ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CPD-315ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CU+ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CU+2ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
... further results
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