Difference between revisions of "Ec-21 000330"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12398 RXN-12398] == * direction: ** LEFT-TO-RIGHT * common name: ** xyloglucan XXLG oligosaccha...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** Class II glu...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12398 RXN-12398] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** xyloglucan XXLG oligosaccharide β-galactosidase
+
** Class II glutamine amidotransferase domain
−
** Glycoside hydrolase-type carbohydrate-binding, subgroup
+
** Amidophosphoribosyltransferase
−
** Beta-galactosidase, family GH2
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
+
** [http://enzyme.expasy.org/EC/2.4.2.14 EC-2.4.2.14]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-13376]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c]
+
** 1 [[PPI]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''<=>''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PRPP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 XXLG xyloglucan oligosaccharide[c] '''+''' 1 H2O[c] '''=>''' 1 XXXG xyloglucan oligosaccharide[c] '''+''' 1 D-galactopyranose[c]
+
** 1 diphosphate[c] '''+''' 1 L-glutamate[c] '''+''' 1 5-phospho-&beta;-D-ribosylamine[c] '''<=>''' 1 L-glutamine[c] '''+''' 1 H2O[c] '''+''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-06_001410]]
+
* [[Ec-02_005190]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Ec-12_007000]]
+
** [[pantograph]]-[[aragem]]
 +
* [[Ec-07_005050]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
+
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-aragem]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=xyloglucan XXLG oligosaccharide &beta;-galactosidase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14905 14905]
−
{{#set: common name=Glycoside hydrolase-type carbohydrate-binding, subgroup}}
+
* LIGAND-RXN:
−
{{#set: common name=Beta-galactosidase, family GH2}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
−
{{#set: ec number=EC-3.2.1.23}}
+
* UNIPROT:
−
{{#set: gene associated=Ec-06_001410|Ec-12_007000}}
+
** [http://www.uniprot.org/uniprot/P28173 P28173]
−
{{#set: in pathway=PWY-6807}}
+
** [http://www.uniprot.org/uniprot/P35433 P35433]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q06203 Q06203]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/O29388 O29388]
−
{{#set: reconstruction source=esiliculosus_genome}}
+
** [http://www.uniprot.org/uniprot/O67236 O67236]
 +
** [http://www.uniprot.org/uniprot/P65829 P65829]
 +
** [http://www.uniprot.org/uniprot/O57979 O57979]
 +
** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
 +
** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
 +
** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
 +
** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
 +
** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
 +
** [http://www.uniprot.org/uniprot/Q57657 Q57657]
 +
** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
 +
** [http://www.uniprot.org/uniprot/O26742 O26742]
 +
** [http://www.uniprot.org/uniprot/P43854 P43854]
 +
** [http://www.uniprot.org/uniprot/P35853 P35853]
 +
** [http://www.uniprot.org/uniprot/P41390 P41390]
 +
** [http://www.uniprot.org/uniprot/Q27601 Q27601]
 +
** [http://www.uniprot.org/uniprot/Q38999 Q38999]
 +
** [http://www.uniprot.org/uniprot/P04046 P04046]
 +
** [http://www.uniprot.org/uniprot/Q55621 Q55621]
 +
** [http://www.uniprot.org/uniprot/Q55038 Q55038]
 +
** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
 +
** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
 +
** [http://www.uniprot.org/uniprot/P52418 P52418]
 +
** [http://www.uniprot.org/uniprot/P52419 P52419]
 +
** [http://www.uniprot.org/uniprot/Q22134 Q22134]
 +
** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
 +
** [http://www.uniprot.org/uniprot/P00497 P00497]
 +
** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Class II glutamine amidotransferase domain}}
 +
{{#set: common name=Amidophosphoribosyltransferase}}
 +
{{#set: ec number=EC-2.4.2.14}}
 +
{{#set: gene associated=Ec-02_005190|Ec-07_005050}}
 +
{{#set: in pathway=PWY-6121|PWY-6122|PWY-7282|PWY-6277}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 20:23, 17 March 2018

Reaction PRPPAMIDOTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Class II glutamine amidotransferase domain
    • Amidophosphoribosyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 diphosphate[c] + 1 L-glutamate[c] + 1 5-phospho-β-D-ribosylamine[c] <=> 1 L-glutamine[c] + 1 H2O[c] + 1 5-phospho-α-D-ribose 1-diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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