Difference between revisions of "PSERPHOSPHA-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5782 TAX-57...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERPHOSPHA-RXN PSERPHOSPHA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** HAD-like domain...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERPHOSPHA-RXN PSERPHOSPHA-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5782 TAX-5782]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-10239 TAX-10239]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** pyrimidine deoxyribonucleotides de novo biosynthesis III
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** HAD-like domain
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* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.3 EC-3.1.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''8''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[CDPREDUCT-RXN]]
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** 1 [[Phosphoserines]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[Serines]][c]
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** 7 associated gene(s):
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* With common name(s):
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*** [[Ec-06_005120]]
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** 1 L(or D)-O-phosphoserine[c] '''+''' 1 H+[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 serine[c]
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*** [[Ec-11_002170]]
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*** [[Ec-19_000440]]
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== Genes associated with this reaction  ==
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*** [[Ec-11_002180]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-21_002920]]
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* Gene: [[Ec-18_001570]]
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*** [[Ec-17_003700]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-06_005570]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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*** [[orthology-aragem]]
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* Category: [[annotation]]
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* [[DCDPKIN-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 7 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Ec-04_001140]]
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*** [[Ec-11_005170]]
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*** [[Ec-03_001380]]
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*** [[Ec-26_003930]]
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*** [[Ec-07_000140]]
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*** [[Ec-22_003280]]
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*** [[Ec-11_004330]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[DTDPKIN-RXN]]
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** 7 associated gene(s):
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*** [[Ec-26_003930]]
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*** [[Ec-04_001140]]
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*** [[Ec-11_004330]]
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*** [[Ec-22_003280]]
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*** [[Ec-11_005170]]
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*** [[Ec-03_001380]]
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*** [[Ec-07_000140]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[DTMPKI-RXN]]
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** 1 associated gene(s):
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*** [[Ec-20_004950]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[DUDPKIN-RXN]]
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** 7 associated gene(s):
+
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*** [[Ec-11_005170]]
+
−
*** [[Ec-11_004330]]
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*** [[Ec-03_001380]]
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*** [[Ec-04_001140]]
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*** [[Ec-07_000140]]
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*** [[Ec-22_003280]]
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*** [[Ec-26_003930]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[DUTP-PYROP-RXN]]
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** 1 associated gene(s):
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*** [[Ec-13_002810]]
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** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-12195]]
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** 9 associated gene(s):
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*** [[Ec-02_005730]]
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*** [[Ec-03_001180]]
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*** [[Ec-05_005340]]
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*** [[Ec-18_004660]]
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*** [[Ec-06_005470]]
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*** [[Ec-01_003690]]
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*** [[Ec-17_000870]]
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*** [[Ec-28_000420]]
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*** [[Ec-03_004860]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[UDPREDUCT-RXN]]
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** 7 associated gene(s):
+
−
*** [[Ec-19_000440]]
+
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*** [[Ec-21_002920]]
+
−
*** [[Ec-17_003700]]
+
−
*** [[Ec-11_002180]]
+
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*** [[Ec-06_005120]]
+
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*** [[Ec-06_005570]]
+
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*** [[Ec-11_002170]]
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** 2 reconstruction source(s) associated:
+
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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−
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8850 RXN-8850]
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== External links  ==
 
== External links  ==
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* LIGAND-MAP:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
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** [http://www.uniprot.org/uniprot/Q58989 Q58989]
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{{#set: taxonomic range=TAX-5782}}
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** [http://www.uniprot.org/uniprot/O25367 O25367]
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{{#set: taxonomic range=TAX-10239}}
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** [http://www.uniprot.org/uniprot/Q9JUR1 Q9JUR1]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/Q9CHW3 Q9CHW3]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/Q9PIL4 Q9PIL4]
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{{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis III}}
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** [http://www.uniprot.org/uniprot/P44997 P44997]
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{{#set: reaction found=8}}
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** [http://www.uniprot.org/uniprot/P0AGB0 P0AGB0]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/P42941 P42941]
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{{#set: completion rate=89.0}}
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** [http://www.uniprot.org/uniprot/Q49823 Q49823]
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** [http://www.uniprot.org/uniprot/O82796 O82796]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=HAD-like domain}}
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{{#set: ec number=EC-3.1.3.3}}
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{{#set: gene associated=Ec-18_001570}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:11, 21 March 2018

Reaction PSERPHOSPHA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • HAD-like domain
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L(or D)-O-phosphoserine[c] + 1 H+[c] + 1 H2O[c] => 1 phosphate[c] + 1 serine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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