Difference between revisions of "RXN0-2381"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6917 PWY-6917] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] == * direction: ** REVERSIBLE * common name: ** Tryptophan synthase beta subun...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6917 PWY-6917] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** REVERSIBLE
 
* common name:
 
* common name:
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** vernolate biosynthesis III
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** Tryptophan synthase beta subunit-like PLP-dependent enzyme
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** Tryptophan synthase (alpha / beta chains)
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** Tryptophan synthase, beta chain
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.2.8 EC-4.1.2.8]
 
* Synonym(s):
 
* Synonym(s):
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** oat seed peroxygenase pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[LINOLEOYL-RXN]]
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** 1 [[INDOLE-3-GLYCEROL-P]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[INDOLE]][c]
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** 0 associated gene:
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* With common name(s):
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** 1 reconstruction source(s) associated:
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** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 indole[c]
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* [[RXN-8497]]
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== Genes associated with this reaction  ==
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** 4 associated gene(s):
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-20_003620]]
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* Gene: [[Ec-27_001950]]
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*** [[Ec-20_003630]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-03_000020]]
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*** Assignment: EC-NUMBER
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*** [[Ec-03_000010]]
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* Gene: [[Ec-00_008830]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Reaction(s) not found ==
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* Gene: [[Ec-24_002360]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16219 RXN-16219]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-24_004010]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-20_002800]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-17_002680]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-01_012080]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-06_007490]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6949]], DIBOA-glucoside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6949 PWY-6949]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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* RHEA:
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{{#set: common name=vernolate biosynthesis III}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14081 14081]
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{{#set: common name=oat seed peroxygenase pathway}}
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* LIGAND-RXN:
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{{#set: reaction found=2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02340 R02340]
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{{#set: total reaction=3}}
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{{#set: direction=REVERSIBLE}}
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{{#set: completion rate=67.0}}
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{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
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{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
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{{#set: common name=Tryptophan synthase, beta chain}}
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{{#set: ec number=EC-4.1.2.8}}
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{{#set: gene associated=Ec-27_001950|Ec-00_008830|Ec-24_002360|Ec-24_004010|Ec-20_002800|Ec-17_002680|Ec-01_012080|Ec-06_007490}}
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{{#set: in pathway=TRPSYN-PWY|PWY-6949}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:11, 21 March 2018

Reaction RXN0-2381

  • direction:
    • REVERSIBLE
  • common name:
    • Tryptophan synthase beta subunit-like PLP-dependent enzyme
    • Tryptophan synthase (alpha / beta chains)
    • Tryptophan synthase, beta chain
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] <=> 1 D-glyceraldehyde 3-phosphate[c] + 1 indole[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6949, DIBOA-glucoside biosynthesis: PWY-6949
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






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