Difference between revisions of "RXN-5341"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** prenyltransferase ** Farnesy...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-glucosidase, family GH1...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** prenyltransferase
+
** Beta-glucosidase, family GH1
−
** Farnesyl pyrophosphate synthase
+
** Beta-glucosidase, family GH3
−
** Prenyltransferase/squalene oxidase
+
** Beta-glucosidase, family GH30
−
** geranyl-diphosphate synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
+
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CPD-4211]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYL-PP]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[LINAMARIN]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[2-HYDROXY-2-METHYLPROPANENITRILE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 isopentenyl diphosphate[c] '''+''' 1 dimethylallyl diphosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 geranyl diphosphate[c]
+
** 1 H2O[c] '''+''' 1 linamarin[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 acetone cyanohydrin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-08_002270]]
+
* Gene: [[Ec-26_002410]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: EC-NUMBER
−
* [[Ec-24_003910]]
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* Gene: [[Ec-04_002190]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: EC-NUMBER
−
* [[Ec-16_004330]]
+
* Gene: [[Ec-07_005240]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-10_003020]]
+
*** Assignment: EC-NUMBER
−
** ESILICULOSUS_GENOME
+
* Gene: [[Ec-20_004800]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-25_002110]]
+
*** Assignment: EC-NUMBER
−
** ESILICULOSUS_GENOME
+
* Gene: [[Ec-07_001850]]
−
***GO-TERM
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-17_001240]]
+
*** Assignment: EC-NUMBER
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-18_000990]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-00_007350]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-21_000990]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-07_006170]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-26_003280]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-14_006550]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
+
* [[PWY-3121]], linamarin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
+
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
+
* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
+
{{#set: common name=Beta-glucosidase, family GH1}}
−
* LIGAND-RXN:
+
{{#set: common name=Beta-glucosidase, family GH3}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
+
{{#set: common name=Beta-glucosidase, family GH30}}
−
* UNIPROT:
+
{{#set: ec number=EC-3.2.1.21}}
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
{{#set: gene associated=Ec-26_002410|Ec-04_002190|Ec-07_005240|Ec-20_004800|Ec-07_001850}}
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
{{#set: in pathway=PWY-3121|PWY-7091}}
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
+
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
+
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
+
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
+
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
+
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
+
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
+
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
+
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
+
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
+
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
+
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
+
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
+
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
+
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
+
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
+
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
+
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=prenyltransferase}}
+
−
{{#set: common name=Farnesyl pyrophosphate synthase}}
+
−
{{#set: common name=Prenyltransferase/squalene oxidase}}
+
−
{{#set: common name=geranyl-diphosphate synthase}}
+
−
{{#set: ec number=EC-2.5.1.1}}
+
−
{{#set: gene associated=Ec-08_002270|Ec-24_003910|Ec-16_004330|Ec-10_003020|Ec-25_002110|Ec-17_001240|Ec-18_000990|Ec-00_007350|Ec-21_000990|Ec-07_006170|Ec-26_003280|Ec-14_006550}}
+
−
{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-6383|PWY-7182|PWY-7659|PWY-5123|PWY-5122|PWY-7102|PWY-7141|PWY-7410}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:07, 21 March 2018

Reaction RXN-5341

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Beta-glucosidase, family GH1
    • Beta-glucosidase, family GH3
    • Beta-glucosidase, family GH30
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3121, linamarin degradation: PWY-3121
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7091, linustatin bioactivation: PWY-7091
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-5341&oldid=24663"