Difference between revisions of "Ec-21 001490"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen oxidase,...")
(Created page with "Category:Gene == Gene Ec-21_001490 == * left end position: ** 2458375 * transcription direction: ** NEGATIVE * right end position: ** 2467712 * centisome position: ** 33.3...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
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== Gene Ec-21_001490 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2458375
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* common name:
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* transcription direction:
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** coproporphyrinogen oxidase, putative chloroplast precursor
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** NEGATIVE
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** coproporphyrinogen oxidase (aerobic), putative chloroplast precursor
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* right end position:
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* ec number:
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** 2467712
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** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
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* centisome position:
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** 33.310776   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0025_0141
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** Esi0025_0141
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4.2.2.10-RXN]]
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** 2 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[WATER]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 2 H+[c] '''+''' 1 oxygen[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 H2O[c] '''+''' 2 CO2[c] '''+''' 1 protoporphyrinogen IX[c]
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* Reaction: [[5.99.1.3-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14897]]
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* [[Ec-19_005390]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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* [[Ec-08_001470]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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== Pathways  ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-7243]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2458375}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2467712}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
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{{#set: centisome position=33.310776    }}
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* UNIPROT:
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{{#set: common name=Esi_0025_0141|Esi0025_0141}}
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** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
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{{#set: reaction associated=4.2.2.10-RXN|5.99.1.3-RXN|RXN-14897}}
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** [http://www.uniprot.org/uniprot/P36552 P36552]
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{{#set: pathway associated=PWY-7243}}
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** [http://www.uniprot.org/uniprot/O25376 O25376]
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** [http://www.uniprot.org/uniprot/P36553 P36553]
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** [http://www.uniprot.org/uniprot/P33771 P33771]
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** [http://www.uniprot.org/uniprot/P43899 P43899]
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** [http://www.uniprot.org/uniprot/O25824 O25824]
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** [http://www.uniprot.org/uniprot/P54304 P54304]
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** [http://www.uniprot.org/uniprot/P11353 P11353]
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** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
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** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
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** [http://www.uniprot.org/uniprot/P36551 P36551]
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** [http://www.uniprot.org/uniprot/P35055 P35055]
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** [http://www.uniprot.org/uniprot/P43898 P43898]
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** [http://www.uniprot.org/uniprot/P72848 P72848]
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** [http://www.uniprot.org/uniprot/P73245 P73245]
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** [http://www.uniprot.org/uniprot/P74132 P74132]
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** [http://www.uniprot.org/uniprot/Q51676 Q51676]
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** [http://www.uniprot.org/uniprot/Q42946 Q42946]
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** [http://www.uniprot.org/uniprot/Q42840 Q42840]
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** [http://www.uniprot.org/uniprot/Q39581 Q39581]
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** [http://www.uniprot.org/uniprot/P95651 P95651]
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** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=coproporphyrinogen oxidase, putative chloroplast precursor}}
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{{#set: common name=coproporphyrinogen oxidase (aerobic), putative chloroplast precursor}}
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{{#set: ec number=EC-1.3.3.3}}
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{{#set: gene associated=Ec-19_005390|Ec-08_001470}}
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{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:13, 21 March 2018

Gene Ec-21_001490

  • left end position:
    • 2458375
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 2467712
  • centisome position:
    • 33.310776
  • Synonym(s):
    • Esi_0025_0141
    • Esi0025_0141

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-21_001490&oldid=25437"