Difference between revisions of "3.1.27.9-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** tRNA-splicing endonuc...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183924 TAX-183924]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183967 TAX-183967]
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* common name:
 
* common name:
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** Entner-Doudoroff pathway II (non-phosphorylative)
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** tRNA-splicing endonuclease subunit Sen15
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* ec number:
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** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
 
* Synonym(s):
 
* Synonym(s):
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** non-phosphorylated glucose catabolism
 
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** glucose degradation
 
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** non-phosphorylated glucose degradation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[2PGADEHYDRAT-RXN]]
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** 1 [[CPD0-2350]][c] '''=>''' 1 [[tRNA-Introns]][c] '''+''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-27_004000]]
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** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c] '''+''' 1 a 3' half-tRNA molecule with a hydroxyl on its 5' end[c] '''+''' 1 a 5' half-tRNA molecule with a 2',3' cyclic phosphate on its 3' end[c]
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*** [[Ec-26_004120]]
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*** [[Ec-14_005400]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-21_006500]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[GLUCONOLACT-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 2 associated gene(s):
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== Pathways  ==
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*** [[Ec-21_001990]]
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* [[PWY-6689]], tRNA splicing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
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*** [[Ec-10_002500]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
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* Category: [[annotation]]
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* [[PEPDEPHOS-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 3 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Ec-26_004170]]
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*** [[Ec-12_000950]]
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*** [[Ec-06_006860]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PYRUFLAVREDUCT-RXN]]
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** 3 associated gene(s):
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*** [[Ec-23_002710]]
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*** [[Ec-15_004230]]
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*** [[Ec-18_003420]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DHDOGALDOL-RXN DHDOGALDOL-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GKI-RXN GKI-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCONATE-DEHYDRATASE-RXN GLUCONATE-DEHYDRATASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-1-DEHYDROGENASE-NADP+-RXN GLUCOSE-1-DEHYDROGENASE-NADP+-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCERALDEHYDE-DEHYDRO-RXN GLYCERALDEHYDE-DEHYDRO-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-183924}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-183967}}
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** [http://www.uniprot.org/uniprot/O07118 O07118]
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{{#set: common name=Entner-Doudoroff pathway II (non-phosphorylative)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=non-phosphorylated glucose catabolism|glucose degradation|non-phosphorylated glucose degradation}}
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{{#set: common name=tRNA-splicing endonuclease subunit Sen15}}
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{{#set: reaction found=4}}
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{{#set: ec number=EC-4.6.1.16}}
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{{#set: total reaction=9}}
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{{#set: gene associated=Ec-21_006500}}
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{{#set: completion rate=44.0}}
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{{#set: in pathway=PWY-6689}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:14, 21 March 2018

Reaction 3.1.27.9-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • tRNA-splicing endonuclease subunit Sen15
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6689, tRNA splicing: PWY-6689
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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