Difference between revisions of "RXN-1882"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10734 RXN-10734] == * direction: ** LEFT-TO-RIGHT * common name: ** Type III Polyketide Synthas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] == * direction: ** REVERSIBLE * common name: ** GDP-mannose 3,5-epimerase * ec n...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10734 RXN-10734] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Type III Polyketide Synthase (phloroglucinol synthase)
+
** GDP-mannose 3,5-epimerase
−
** Type III Polyketide Synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
+
** [http://enzyme.expasy.org/EC/5.1.3.18 EC-5.1.3.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 8 [[MALONYL-COA]][c] '''+''' 7 [[PROTON]][c] '''=>''' 1 [[CPD-11555]][c] '''+''' 8 [[CO-A]][c] '''+''' 8 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 8 malonyl-CoA[c] '''+''' 7 H+[c] '''=>''' 1 octoketide[c] '''+''' 8 coenzyme A[c] '''+''' 8 CO2[c] '''+''' 1 H2O[c]
+
** 1 GDP-&alpha;-D-mannose[c] '''<=>''' 1 GDP-&beta;-L-galactose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-07_006660]]
+
* Gene: [[Ec-06_004510]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Ec-02_004580]]
+
** Source: [[orthology-aragem]]
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6312]], barbaloin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6312 PWY-6312]
+
* [[PWY4FS-12]], VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-12 PWY4FS-12]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY4FS-13]], extended VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-13 PWY4FS-13]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5115]], GDP-L-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5115 PWY-5115]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=Type III Polyketide Synthase (phloroglucinol synthase)}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11144 11144]
−
{{#set: common name=Type III Polyketide Synthase}}
+
* LIGAND-RXN:
−
{{#set: ec number=EC-2.3.1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889]
−
{{#set: gene associated=Ec-07_006660|Ec-02_004580}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=PWY-6312}}
+
{{#set: common name=GDP-mannose 3,5-epimerase}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: ec number=EC-5.1.3.18}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: gene associated=Ec-06_004510}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: in pathway=PWY4FS-12|PWY4FS-13|PWY-5115|PWY-882}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction RXN-1882

  • direction:
    • REVERSIBLE
  • common name:
    • GDP-mannose 3,5-epimerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP-α-D-mannose[c] <=> 1 GDP-β-L-galactose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY4FS-12, VTC2 cycle: PWY4FS-12
    • 1 reactions found over 2 reactions in the full pathway
  • PWY4FS-13, extended VTC2 cycle: PWY4FS-13
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5115, GDP-L-galactose biosynthesis: PWY-5115
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-882, L-ascorbate biosynthesis I (L-galactose pathway): PWY-882
    • 7 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-1882&oldid=25570"