Difference between revisions of "PWY1F-FLAVSYN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] == * direction: ** REVERSIBLE * common nam...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
 
* common name:
 
* common name:
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** Glutamate dehydrogenase (NAD-dependent)
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** flavonoid biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/1.4.1.2 EC-1.4.1.2]
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* Synonym(s):
 
* Synonym(s):
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** flavonoid biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''5''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[AMMONIUM]][c]
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H2O[c] '''+''' 1 L-glutamate[c] '''+''' 1 NAD+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 ammonium[c]
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*** [[Ec-10_001480]]
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*** [[Ec-04_001280]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* [[Ec-06_001980]]
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* [[APIGNAR-RXN]]
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** ESILICULOSUS_GENOME
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** 2 associated gene(s):
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***EC-NUMBER
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*** [[Ec-00_005930]]
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* [[Ec-12_008040]]
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*** [[Ec-05_001880]]
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** [[pantograph]]-[[aragem]]
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** 1 reconstruction source(s) associated:
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* [[Ec-06_008240]]
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*** [[orthology-aragem]]
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** [[pantograph]]-[[aragem]]
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* [[NARINGENIN-3-DIOXYGENASE-RXN]]
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== Pathways  ==
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** 3 associated gene(s):
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* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEG1-PWY GLUTAMATE-DEG1-PWY]
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*** [[Ec-08_003510]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[Ec-19_002760]]
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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*** [[Ec-19_002750]]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
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*** [[orthology-aragem]]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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* [[NARINGENIN-CHALCONE-SYNTHASE-RXN]]
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* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
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** 3 associated gene(s):
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** '''1''' reactions found over '''7''' reactions in the full pathway
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*** [[Ec-07_006660]]
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* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
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*** [[Ec-02_004580]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[Ec-07_003670]]
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* [[PWY-7126]], ethylene biosynthesis IV (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126]
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** 1 reconstruction source(s) associated:
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** [[orthology-aragem]]
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== Reconstruction information  ==
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* [[RXN-3142]]
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* [[orthology]]:
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** 1 associated gene(s):
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** [[pantograph]]:
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*** [[Ec-03_003520]]
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*** [[aragem]]
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** 1 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[orthology-aragem]]
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** [[pathwaytools]]:
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== Reaction(s) not found ==
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15133 15133]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-58024}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
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{{#set: common name=flavonoid biosynthesis}}
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* UNIPROT:
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{{#set: common name=flavonoid biosynthesis}}
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** [http://www.uniprot.org/uniprot/P20016 P20016]
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{{#set: reaction found=5}}
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** [http://www.uniprot.org/uniprot/P28997 P28997]
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{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/P41755 P41755]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
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** [http://www.uniprot.org/uniprot/P00365 P00365]
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** [http://www.uniprot.org/uniprot/P93541 P93541]
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** [http://www.uniprot.org/uniprot/P80319 P80319]
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** [http://www.uniprot.org/uniprot/P24295 P24295]
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** [http://www.uniprot.org/uniprot/P27346 P27346]
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** [http://www.uniprot.org/uniprot/P33327 P33327]
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** [http://www.uniprot.org/uniprot/Q43260 Q43260]
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** [http://www.uniprot.org/uniprot/O04937 O04937]
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** [http://www.uniprot.org/uniprot/Q25415 Q25415]
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** [http://www.uniprot.org/uniprot/O74024 O74024]
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** [http://www.uniprot.org/uniprot/O59650 O59650]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Glutamate dehydrogenase (NAD-dependent)}}
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{{#set: ec number=EC-1.4.1.2}}
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{{#set: gene associated=Ec-06_001980|Ec-12_008040|Ec-06_008240}}
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{{#set: in pathway=GLUTAMATE-DEG1-PWY|PWY-6728|P162-PWY|PWY-5022|ALACAT2-PWY|PWY-7126}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 19:07, 21 March 2018

Pathway PWY1F-FLAVSYN

  • taxonomic range:
  • common name:
    • flavonoid biosynthesis
  • Synonym(s):
    • flavonoid biosynthesis

Reaction(s) found

5 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY1F-FLAVSYN&oldid=24698"