Difference between revisions of "RIB5PISOM-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3,4-d...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** REVERSIBLE * common name: ** Ribose 5-phosphate iso...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** REVERSIBLE |
* common name: | * common name: | ||
− | ** | + | ** Ribose 5-phosphate isomerase, type A |
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.3.1.6 EC-5.3.1.6] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 D- | + | ** 1 D-ribose 5-phosphate[c] '''<=>''' 1 D-ribulose 5-phosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[Ec- | + | * Gene: [[Ec-08_003540]] |
− | ** | + | ** Source: [[annotation-esiliculosus_genome]] |
− | *** | + | *** Assignment: EC-NUMBER |
+ | ** Source: [[orthology-aragem]] | ||
+ | ** Source: [[orthology-aragem]] | ||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] |
− | ** ''' | + | ** '''12''' reactions found over '''15''' reactions in the full pathway |
− | * [[PWY- | + | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] |
− | ** ''' | + | ** '''13''' reactions found over '''13''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] |
− | ** ''' | + | ** '''10''' reactions found over '''10''' reactions in the full pathway |
+ | * [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-aragem]] | ||
+ | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
** Source: [[annotation-esiliculosus_genome]] | ** Source: [[annotation-esiliculosus_genome]] | ||
Line 33: | Line 44: | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common name= | + | ** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0] |
− | {{#set: ec number=EC- | + | ** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7] |
− | {{#set: gene associated=Ec- | + | ** [http://www.uniprot.org/uniprot/P44725 P44725] |
− | {{#set: in pathway=PWY- | + | ** [http://www.uniprot.org/uniprot/Q58998 Q58998] |
− | {{#set: reconstruction category=annotation}} | + | ** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5] |
− | {{#set: reconstruction source=annotation-esiliculosus_genome}} | + | ** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://www.uniprot.org/uniprot/P37351 P37351] |
+ | ** [http://www.uniprot.org/uniprot/P74234 P74234] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55766 Q55766] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: common name=Ribose 5-phosphate isomerase, type A}} | ||
+ | {{#set: ec number=EC-5.3.1.6}} | ||
+ | {{#set: gene associated=Ec-08_003540}} | ||
+ | {{#set: in pathway=P124-PWY|CALVIN-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 19:18, 21 March 2018
Contents
Reaction RIB5PISOM-RXN
- direction:
- REVERSIBLE
- common name:
- Ribose 5-phosphate isomerase, type A
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 RIBOSE-5P[c] <=> 1 RIBULOSE-5P[c]
- With common name(s):
- 1 D-ribose 5-phosphate[c] <=> 1 D-ribulose 5-phosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Ec-08_003540
- Source: annotation-esiliculosus_genome
- Assignment: EC-NUMBER
- Source: orthology-aragem
- Source: orthology-aragem
- Source: annotation-esiliculosus_genome
Pathways
- P124-PWY, Bifidobacterium shunt: P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
- 13 reactions found over 13 reactions in the full pathway
- PWY-5723, Rubisco shunt: PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
- 7 reactions found over 9 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
- 11 reactions found over 12 reactions in the full pathway
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
- 5 reactions found over 5 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-aragem
- Tool: pantograph
- Source: orthology-aragem
- Category: annotation
- Source: annotation-esiliculosus_genome
- Tool: pathwaytools
- Source: annotation-esiliculosus_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: