Difference between revisions of "PWY-6958"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-KINASE-RXN SHIKIMATE-KINASE-RXN] == * direction: ** REVERSIBLE * common name: ** P-loop c...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6958 PWY-6958] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-30...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-KINASE-RXN SHIKIMATE-KINASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6958 PWY-6958] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3208 TAX-3208]
 
* common name:
 
* common name:
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** P-loop containing nucleoside triphosphate hydrolase
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** icosapentaenoate biosynthesis I (lower eukaryotes)
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** shikimate kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.71 EC-2.7.1.71]
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* Synonym(s):
 
* Synonym(s):
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** eicosapentaenoate biosynthesis I (lower eukaryotes)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''8''' reactions in the full pathway
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** 1 [[SHIKIMATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[SHIKIMATE-5P]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
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* [[RXN-16041]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 shikimate[c] '''+''' 1 ATP[c] '''<=>''' 1 shikimate 3-phosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
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*** [[Ec-16_002160]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-16042]]
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* [[Ec-11_000770]]
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** 1 associated gene(s):
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** ESILICULOSUS_GENOME
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*** [[Ec-16_002160]]
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***GO-TERM
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** 1 reconstruction source(s) associated:
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* [[Ec-02_005600]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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== Reaction(s) not found ==
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16019 RXN-16019]
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** [[pantograph]]-[[aragem]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16020 RXN-16020]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16021 RXN-16021]
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16022 RXN-16022]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8347 RXN-8347]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8350 RXN-8350]
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-3041}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13121 13121]
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{{#set: taxonomic range=TAX-3208}}
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* LIGAND-RXN:
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{{#set: common name=icosapentaenoate biosynthesis I (lower eukaryotes)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412]
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{{#set: common name=eicosapentaenoate biosynthesis I (lower eukaryotes)}}
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* UNIPROT:
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7]
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{{#set: total reaction=8}}
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** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5]
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{{#set: completion rate=25.0}}
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** [http://www.uniprot.org/uniprot/P07547 P07547]
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** [http://www.uniprot.org/uniprot/P08566 P08566]
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** [http://www.uniprot.org/uniprot/P43880 P43880]
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** [http://www.uniprot.org/uniprot/P63600 P63600]
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** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1]
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** [http://www.uniprot.org/uniprot/P37944 P37944]
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** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1]
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** [http://www.uniprot.org/uniprot/P10880 P10880]
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** [http://www.uniprot.org/uniprot/Q00497 Q00497]
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** [http://www.uniprot.org/uniprot/P34003 P34003]
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** [http://www.uniprot.org/uniprot/P43906 P43906]
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** [http://www.uniprot.org/uniprot/P72796 P72796]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=P-loop containing nucleoside triphosphate hydrolase}}
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{{#set: common name=shikimate kinase}}
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{{#set: ec number=EC-2.7.1.71}}
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{{#set: gene associated=Ec-11_000770|Ec-02_005600}}
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{{#set: in pathway=PWY-6163}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:20, 21 March 2018

Pathway PWY-6958

  • taxonomic range:
  • common name:
    • icosapentaenoate biosynthesis I (lower eukaryotes)
  • Synonym(s):
    • eicosapentaenoate biosynthesis I (lower eukaryotes)

Reaction(s) found

2 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6958&oldid=26180"