Difference between revisions of "Ec-12 005520"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Gene == Gene Ec-12_005520 == * left end position: ** 5021292 * transcription direction: ** NEGATIVE * right end position: ** 5025083 * centisome position: ** 60.2...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Gene]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936] ==
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== Gene Ec-12_005520 ==
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* taxonomic range:
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* left end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** 5021292
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* common name:
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* transcription direction:
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** seleno-amino acid biosynthesis
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** NEGATIVE
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* right end position:
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** 5025083
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* centisome position:
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** 60.23585   
 
* Synonym(s):
 
* Synonym(s):
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** Se-amino acid biosynthesis
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** Esi_0081_0023
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** selenocysteine and selenomethionine biosynthesis
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** Esi0081_0023
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** BCAT1
  
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== Reaction(s) found ==
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== Reactions associated ==
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'''4''' reactions found over '''5''' reactions in the full pathway
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* Reaction: [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
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* [[RXN-12726]]
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** Source: [[annotation-esiliculosus_genome]]
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** 3 associated gene(s):
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*** Assignment: go-term
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*** [[Ec-00_008830]]
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** Source: [[orthology-aragem]]
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*** [[Ec-01_011260]]
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* Reaction: [[BRANCHED-CHAINAMINOTRANSFERLEU-RXN]]
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*** [[Ec-01_012080]]
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** Source: [[annotation-esiliculosus_genome]]
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** 2 reconstruction source(s) associated:
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*** Assignment: go-term
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*** [[annotation-esiliculosus_genome]]
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* Reaction: [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-12729]]
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*** Assignment: go-term
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** 2 associated gene(s):
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== Pathways associated ==
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*** [[Ec-00_002820]]
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* [[PWY-5076]]
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*** [[Ec-05_006760]]
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* [[ILEUSYN-PWY]]
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** 1 reconstruction source(s) associated:
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* [[ILEUDEG-PWY]]
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*** [[annotation-esiliculosus_genome]]
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* [[LEU-DEG2-PWY]]
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* [[RXN-12730]]
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* [[VALDEG-PWY]]
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** 1 associated gene(s):
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* [[PWY-5057]]
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*** [[Ec-28_003190]]
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* [[VALSYN-PWY]]
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** 1 reconstruction source(s) associated:
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* [[PWY-7767]]
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-5108]]
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* [[SERINE-O-ACETTRAN-RXN]]
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* [[LEUSYN-PWY]]
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** 4 associated gene(s):
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* [[PWY-5103]]
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*** [[Ec-22_002810]]
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* [[PWY-5101]]
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*** [[Ec-00_004310]]
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* [[PWY-5078]]
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*** [[Ec-24_003520]]
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* [[ALANINE-VALINESYN-PWY]]
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*** [[Ec-01_001610]]
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* [[PWY-5104]]
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** 2 reconstruction source(s) associated:
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−
*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12728 RXN-12728]
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== External links  ==
 
== External links  ==
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* PLANTCYC : PWY-6936
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{{#set: left end position=5021292}}
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* ARACYC:
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{{#set: transcription direction=NEGATIVE}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-6936 PWY-6936]
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{{#set: right end position=5025083}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: centisome position=60.23585    }}
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{{#set: common name=seleno-amino acid biosynthesis}}
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{{#set: common name=Esi_0081_0023|Esi0081_0023|BCAT1}}
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{{#set: common name=Se-amino acid biosynthesis|selenocysteine and selenomethionine biosynthesis}}
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{{#set: reaction associated=BRANCHED-CHAINAMINOTRANSFERILEU-RXN|BRANCHED-CHAINAMINOTRANSFERLEU-RXN|BRANCHED-CHAINAMINOTRANSFERVAL-RXN}}
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{{#set: reaction found=4}}
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{{#set: pathway associated=PWY-5076|ILEUSYN-PWY|ILEUDEG-PWY|LEU-DEG2-PWY|VALDEG-PWY|PWY-5057|VALSYN-PWY|PWY-7767|PWY-5108|LEUSYN-PWY|PWY-5103|PWY-5101|PWY-5078|ALANINE-VALINESYN-PWY|PWY-5104}}
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{{#set: total reaction=5}}
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{{#set: completion rate=80.0}}
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Latest revision as of 19:22, 21 March 2018

Gene Ec-12_005520

  • left end position:
    • 5021292
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 5025083
  • centisome position:
    • 60.23585
  • Synonym(s):
    • Esi_0081_0023
    • Esi0081_0023
    • BCAT1

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-12_005520&oldid=26475"