Difference between revisions of "GPH-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-122...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-phosphoglycolate phosphatase,...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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* common name:
 
* common name:
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** pyruvate fermentation to butanoate
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** 2-phosphoglycolate phosphatase, eukaryotic
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** phosphoglycolate phosphatase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18]
 
* Synonym(s):
 
* Synonym(s):
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** central fermentation pathway
 
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** acetobutylicum fermentation
 
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** pyruvate fermentation to butyrate
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** 1 [[CPD-67]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GLYCOLLATE]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-26_003940]]
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** 1 2-phosphoglycolate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 glycolate[c]
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*** [[Ec-24_000870]]
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*** [[Ec-22_002850]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-28_001790]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PYRUFLAVREDUCT-RXN]]
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*** Assignment: GO-TERM
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** 3 associated gene(s):
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* Gene: [[Ec-12_008080]]
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*** [[Ec-23_002710]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-15_004230]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-18_003420]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
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*** [[annotation-esiliculosus_genome]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-11662]]
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== Reconstruction information  ==
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** 2 associated gene(s):
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* Category: [[annotation]]
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*** [[Ec-19_005290]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-14_006530]]
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*** Tool: [[pathwaytools]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-11667]]
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** 2 associated gene(s):
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*** [[Ec-17_000320]]
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−
*** [[Ec-14_006530]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRATE-KINASE-RXN BUTYRATE-KINASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHATE-BUTYRYLTRANSFERASE-RXN PHOSPHATE-BUTYRYLTRANSFERASE-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1224}}
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* RHEA:
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{{#set: taxonomic range=TAX-1239}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
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{{#set: common name=pyruvate fermentation to butanoate}}
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* LIGAND-RXN:
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{{#set: common name=central fermentation pathway|acetobutylicum fermentation|pyruvate fermentation to butyrate}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
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{{#set: reaction found=4}}
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* UNIPROT:
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/P40852 P40852]
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{{#set: completion rate=57.0}}
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** [http://www.uniprot.org/uniprot/P40853 P40853]
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** [http://www.uniprot.org/uniprot/P32662 P32662]
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** [http://www.uniprot.org/uniprot/P73525 P73525]
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** [http://www.uniprot.org/uniprot/O33512 O33512]
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** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2-phosphoglycolate phosphatase, eukaryotic}}
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{{#set: common name=phosphoglycolate phosphatase}}
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{{#set: ec number=EC-3.1.3.18}}
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{{#set: gene associated=Ec-28_001790|Ec-12_008080}}
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{{#set: in pathway=PWY-181}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:23, 21 March 2018

Reaction GPH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-phosphoglycolate phosphatase, eukaryotic
    • phosphoglycolate phosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-phosphoglycolate[c] + 1 H2O[c] => 1 phosphate[c] + 1 glycolate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-181, photorespiration: PWY-181
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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