Difference between revisions of "UROGENDECARBOX-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5805 PWY-5805] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Uroporphy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5805 PWY-5805] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** nonaprenyl diphosphate biosynthesis I
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** Uroporphyrinogen decarboxylase, chloroplast precursor
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
 
* Synonym(s):
 
* Synonym(s):
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** solanesyl diphosphate biosynthesis
 
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** solanesyl pyrophosphate biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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  '''1''' reactions found over '''1''' reactions in the full pathway
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* With identifiers:
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* [[TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN]]
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** 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 4 [[PROTON]][c] '''=>''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 4 [[CARBON-DIOXIDE]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-17_003520]]
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** 1 uroporphyrinogen-III[c] '''+''' 4 H+[c] '''=>''' 1 coproporphyrinogen III[c] '''+''' 4 CO2[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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== Reaction(s) not found ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-24_000620]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-01_000360]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-24_000650]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2759}}
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865]
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{{#set: taxonomic range=TAX-2157}}
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* LIGAND-RXN:
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{{#set: common name=nonaprenyl diphosphate biosynthesis I}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
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{{#set: common name=solanesyl diphosphate biosynthesis|solanesyl pyrophosphate biosynthesis}}
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* UNIPROT:
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P06132 P06132]
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{{#set: total reaction=1}}
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** [http://www.uniprot.org/uniprot/P16891 P16891]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P32395 P32395]
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** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
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** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
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** [http://www.uniprot.org/uniprot/P29680 P29680]
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** [http://www.uniprot.org/uniprot/P32347 P32347]
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** [http://www.uniprot.org/uniprot/P32920 P32920]
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** [http://www.uniprot.org/uniprot/P54224 P54224]
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** [http://www.uniprot.org/uniprot/O81220 O81220]
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** [http://www.uniprot.org/uniprot/P70697 P70697]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Uroporphyrinogen decarboxylase, chloroplast precursor}}
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{{#set: ec number=EC-4.1.1.37}}
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{{#set: gene associated=Ec-24_000620|Ec-01_000360|Ec-24_000650}}
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{{#set: in pathway=HEMESYN2-PWY|PWY0-1415|PWY-7159|PWY-7766|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II|PWY-5531}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:23, 21 March 2018

Reaction UROGENDECARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Uroporphyrinogen decarboxylase, chloroplast precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7766, heme biosynthesis IV (Gram-positive bacteria): PWY-7766
    • 1 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 6 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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