Difference between revisions of "CPD1F-114"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** Seryl-tRNA synthetase ** se...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD1F-114 CPD1F-114] == * smiles: ** CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC=C(CCC=C(C)C)C)...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD1F-114 CPD1F-114] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC=C(CCC=C(C)C)C)C)C)C)C)C)C
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* inchi key:
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** InChIKey=OAIJSZIZWZSQBC-GYZMGTAESA-N
 
* common name:
 
* common name:
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** Seryl-tRNA synthetase
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** all-trans-lycopene
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** serine-tRNA ligase
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* molecular weight:
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* ec number:
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** 536.882   
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
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* Synonym(s):
 
* Synonym(s):
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** ψ,ψ-carotene
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN1F-150]]
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** 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 H+[c] '''+''' 1 L-serine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAsec[c] '''=>''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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* [[RXN1F-147]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-24_004300]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-08_002360]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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== Pathways  ==
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* LIPID_MAPS : LMPR01070257
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** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=446925 446925]
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{{#set: common name=Seryl-tRNA synthetase}}
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* HMDB : HMDB03000
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{{#set: common name=serine-tRNA ligase}}
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* LIGAND-CPD:
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{{#set: ec number=EC-6.1.1.11}}
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** [http://www.genome.jp/dbget-bin/www_bget?C05432 C05432]
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{{#set: gene associated=Ec-24_004300|Ec-08_002360}}
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* CHEMSPIDER:
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{{#set: in pathway=PWY0-901|PWY-6281}}
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** [http://www.chemspider.com/Chemical-Structure.394156.html 394156]
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{{#set: reconstruction category=annotation}}
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* CHEBI:
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15948 15948]
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{{#set: reconstruction tool=pathwaytools}}
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* METABOLIGHTS : MTBLC15948
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{{#set: smiles=CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC=C(CCC=C(C)C)C)C)C)C)C)C)C}}
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{{#set: inchi key=InChIKey=OAIJSZIZWZSQBC-GYZMGTAESA-N}}
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{{#set: common name=all-trans-lycopene}}
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{{#set: molecular weight=536.882    }}
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{{#set: common name=ψ,ψ-carotene}}
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{{#set: consumed by=RXN1F-150}}
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{{#set: reversible reaction associated=RXN1F-147}}

Latest revision as of 19:24, 21 March 2018

Metabolite CPD1F-114

  • smiles:
    • CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC=C(CCC=C(C)C)C)C)C)C)C)C)C
  • inchi key:
    • InChIKey=OAIJSZIZWZSQBC-GYZMGTAESA-N
  • common name:
    • all-trans-lycopene
  • molecular weight:
    • 536.882
  • Synonym(s):
    • ψ,ψ-carotene

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • LIPID_MAPS : LMPR01070257
  • PUBCHEM:
  • HMDB : HMDB03000
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC15948




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