Difference between revisions of "SUCCCOASYN-RXN"

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(Created page with "Category:Gene == Gene Ec-08_006600 == * left end position: ** 6581154 * transcription direction: ** POSITIVE * right end position: ** 6583463 * centisome position: ** 98.2...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** REVERSIBLE * common name: ** Succinate:CoA ligase...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-08_006600 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] ==
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* left end position:
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* direction:
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** 6581154
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** REVERSIBLE
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* transcription direction:
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* common name:
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** POSITIVE
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** Succinate:CoA ligase (ADP-forming)
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* right end position:
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* ec number:
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** 6583463
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** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
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* centisome position:
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** 98.26921   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0005_0023
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** Succinate thiokinase
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** Esi0005_0023
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** succinyl CoA synthesis
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** NCAIR mutase
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== Reactions associated ==
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== Reaction Formula ==
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* [[AIRCARBOXY-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[SUC-COA]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 coenzyme A[c] '''+''' 1 succinate[c] '''+''' 1 ATP[c] '''<=>''' 1 succinyl-CoA[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c]
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* [[PWY-6124]]
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 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-10_000030]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-02_001020]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
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** '''6''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''9''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=6581154}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661]
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{{#set: right end position=6583463}}
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* LIGAND-RXN:
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{{#set: centisome position=98.26921    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
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{{#set: common name=Esi_0005_0023|Esi0005_0023|NCAIR mutase}}
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* UNIPROT:
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{{#set: reaction associated=AIRCARBOXY-RXN}}
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** [http://www.uniprot.org/uniprot/O28098 O28098]
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{{#set: pathway associated=PWY-6124}}
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** [http://www.uniprot.org/uniprot/P53594 P53594]
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** [http://www.uniprot.org/uniprot/O28733 O28733]
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** [http://www.uniprot.org/uniprot/P45101 P45101]
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** [http://www.uniprot.org/uniprot/P45102 P45102]
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** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
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** [http://www.uniprot.org/uniprot/Q58643 Q58643]
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** [http://www.uniprot.org/uniprot/O26663 O26663]
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** [http://www.uniprot.org/uniprot/P80886 P80886]
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** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
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** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
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** [http://www.uniprot.org/uniprot/P80865 P80865]
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** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
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** [http://www.uniprot.org/uniprot/O67729 O67729]
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** [http://www.uniprot.org/uniprot/O67546 O67546]
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** [http://www.uniprot.org/uniprot/P53593 P53593]
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** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
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** [http://www.uniprot.org/uniprot/P0A836 P0A836]
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** [http://www.uniprot.org/uniprot/O82662 O82662]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Succinate:CoA ligase (ADP-forming)}}
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{{#set: ec number=EC-6.2.1.5}}
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{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
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{{#set: gene associated=Ec-10_000030|Ec-02_001020}}
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{{#set: in pathway=PWY-5913|P42-PWY|PWY-5537|PWY-7384|PWY-5392|P23-PWY|PWY-6969|PWY-6728|PWY-5538|PWY-5690|PWY66-398|TCA}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:25, 21 March 2018

Reaction SUCCCOASYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Succinate:CoA ligase (ADP-forming)
  • ec number:
  • Synonym(s):
    • Succinate thiokinase
    • succinyl CoA synthesis

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 succinate[c] + 1 ATP[c] <=> 1 succinyl-CoA[c] + 1 phosphate[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5537, pyruvate fermentation to acetate V: PWY-5537
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI: PWY-5538
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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