Difference between revisions of "Ec-08 005590"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHAGALACTOSID-RXN ALPHAGALACTOSID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Alpha-g...")
(Created page with "Category:Gene == Gene Ec-08_005590 == * left end position: ** 5344476 * transcription direction: ** NEGATIVE * right end position: ** 5349106 * centisome position: ** 79.8...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHAGALACTOSID-RXN ALPHAGALACTOSID-RXN] ==
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== Gene Ec-08_005590 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5344476
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* common name:
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* transcription direction:
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** Alpha-galactosidase, family GH36
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/3.2.1.22 EC-3.2.1.22]
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** 5349106
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* centisome position:
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** 79.803246   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0005_0248
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** Esi0005_0248
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN]]
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** 1 [[MELIBIOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[D-galactopyranose]][c]
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* With common name(s):
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** 1 melibiose[c] '''+''' 1 H2O[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 D-galactopyranose[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-26_006290]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-04_003730]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-17_000840]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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== Pathways  ==
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* [[PWY0-1301]], melibiose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1301 PWY0-1301]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=5344476}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28663 28663]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=5349106}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01101 R01101]
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{{#set: centisome position=79.803246    }}
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* UNIPROT:
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{{#set: common name=Esi_0005_0248|Esi0005_0248}}
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** [http://www.uniprot.org/uniprot/P16551 P16551]
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{{#set: reaction associated=TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN}}
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** [http://www.uniprot.org/uniprot/P27756 P27756]
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** [http://www.uniprot.org/uniprot/P04824 P04824]
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** [http://www.uniprot.org/uniprot/P06720 P06720]
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** [http://www.uniprot.org/uniprot/P06280 P06280]
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** [http://www.uniprot.org/uniprot/P51569 P51569]
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** [http://www.uniprot.org/uniprot/O93816 O93816]
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** [http://www.uniprot.org/uniprot/Q03647 Q03647]
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** [http://www.uniprot.org/uniprot/P14749 P14749]
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** [http://www.uniprot.org/uniprot/P28351 P28351]
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** [http://www.uniprot.org/uniprot/P43467 P43467]
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** [http://www.uniprot.org/uniprot/Q99172 Q99172]
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** [http://www.uniprot.org/uniprot/P41945 P41945]
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** [http://www.uniprot.org/uniprot/P41946 P41946]
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** [http://www.uniprot.org/uniprot/P41947 P41947]
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** [http://www.uniprot.org/uniprot/Q92457 Q92457]
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** [http://www.uniprot.org/uniprot/Q92456 Q92456]
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** [http://www.uniprot.org/uniprot/Q92451 Q92451]
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** [http://www.uniprot.org/uniprot/O04943 O04943]
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** [http://www.uniprot.org/uniprot/O04944 O04944]
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** [http://www.uniprot.org/uniprot/Q39811 Q39811]
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** [http://www.uniprot.org/uniprot/Q41100 Q41100]
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** [http://www.uniprot.org/uniprot/Q42656 Q42656]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Alpha-galactosidase, family GH36}}
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{{#set: ec number=EC-3.2.1.22}}
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{{#set: gene associated=Ec-26_006290|Ec-04_003730|Ec-17_000840}}
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{{#set: in pathway=PWY0-1301}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:26, 21 March 2018

Gene Ec-08_005590

  • left end position:
    • 5344476
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 5349106
  • centisome position:
    • 79.803246
  • Synonym(s):
    • Esi_0005_0248
    • Esi0005_0248

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-08_005590&oldid=26895"