Difference between revisions of "PWY-735"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** Transaldolase * ec n...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** Transaldolase
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** jasmonic acid biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
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* Synonym(s):
 
* Synonym(s):
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** jasmonate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''19''' reactions in the full pathway
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** 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
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* [[RXN-10696]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 D-sedoheptulose 7-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
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*** [[Ec-22_002920]]
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*** [[Ec-26_004320]]
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== Genes associated with this reaction  ==
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*** [[Ec-08_006390]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-01_002780]]
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*** [[annotation-esiliculosus_genome]]
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** [[pantograph]]-[[aragem]]
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* [[RXN-10697]]
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** [[pantograph]]-[[aragem]]
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** 4 associated gene(s):
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* [[Ec-06_003940]]
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*** [[Ec-06_001380]]
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** ESILICULOSUS_GENOME
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*** [[Ec-16_003560]]
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***AUTOMATED-NAME-MATCH
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*** [[Ec-16_001250]]
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== Pathways  ==
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*** [[Ec-14_006530]]
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** 1 reconstruction source(s) associated:
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** '''12''' reactions found over '''15''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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* [[RXN-10698]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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** 2 associated gene(s):
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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*** [[Ec-19_005290]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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*** [[Ec-14_006530]]
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** 1 reconstruction source(s) associated:
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** '''7''' reactions found over '''9''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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* [[RXN-10702]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** 2 associated gene(s):
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== Reconstruction information  ==
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*** [[Ec-19_005290]]
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* Category: [[orthology]]
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*** [[Ec-14_006530]]
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** Source: [[orthology-aragem]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[annotation-esiliculosus_genome]]
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* Category: [[annotation]]
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* [[RXN-10703]]
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** Source: [[annotation-esiliculosus_genome]]
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** 2 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Ec-14_006530]]
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*** [[Ec-19_005290]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[RXN-10704]]
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** 4 associated gene(s):
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*** [[Ec-14_006530]]
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*** [[Ec-16_001250]]
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*** [[Ec-16_003560]]
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*** [[Ec-06_001380]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-10705]]
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** 4 associated gene(s):
 +
*** [[Ec-16_003560]]
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*** [[Ec-16_001250]]
 +
*** [[Ec-06_001380]]
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*** [[Ec-14_006530]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-10706]]
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** 3 associated gene(s):
 +
*** [[Ec-08_006390]]
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*** [[Ec-26_004320]]
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*** [[Ec-22_002920]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[RXN-10707]]
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** 3 associated gene(s):
 +
*** [[Ec-26_004320]]
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*** [[Ec-22_002920]]
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*** [[Ec-08_006390]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-1321]]
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** 4 associated gene(s):
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*** [[Ec-03_000010]]
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*** [[Ec-03_000020]]
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*** [[Ec-20_003620]]
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*** [[Ec-20_003630]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=12-OXOPHYTODIENOATE-REDUCTASE-RXN 12-OXOPHYTODIENOATE-REDUCTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ALLENE-OXIDE-CYCLASE-RXN ALLENE-OXIDE-CYCLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10699 RXN-10699]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10700 RXN-10700]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10701 RXN-10701]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10708 RXN-10708]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-745 RXN-745]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-19 RXN1F-19]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-735 PWY-735]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
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{{#set: common name=jasmonic acid biosynthesis}}
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* UNIPROT:
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{{#set: common name=jasmonate biosynthesis}}
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** [http://www.uniprot.org/uniprot/P17441 P17441]
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{{#set: reaction found=10}}
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** [http://www.uniprot.org/uniprot/P17440 P17440]
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{{#set: total reaction=19}}
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** [http://www.uniprot.org/uniprot/P37837 P37837]
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{{#set: completion rate=53.0}}
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** [http://www.uniprot.org/uniprot/P45055 P45055]
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** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
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** [http://www.uniprot.org/uniprot/P0A867 P0A867]
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** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
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** [http://www.uniprot.org/uniprot/Q58370 Q58370]
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** [http://www.uniprot.org/uniprot/P34214 P34214]
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** [http://www.uniprot.org/uniprot/P0A870 P0A870]
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** [http://www.uniprot.org/uniprot/P15019 P15019]
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** [http://www.uniprot.org/uniprot/P53228 P53228]
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** [http://www.uniprot.org/uniprot/P51778 P51778]
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** [http://www.uniprot.org/uniprot/P72797 P72797]
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** [http://www.uniprot.org/uniprot/O04894 O04894]
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** [http://www.uniprot.org/uniprot/P78865 P78865]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Transaldolase}}
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{{#set: ec number=EC-2.2.1.2}}
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{{#set: gene associated=Ec-01_002780|Ec-06_003940}}
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{{#set: in pathway=P124-PWY|P185-PWY|PWY-5723|PWY-1861|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:26, 21 March 2018

Pathway PWY-735

  • taxonomic range:
  • common name:
    • jasmonic acid biosynthesis
  • Synonym(s):
    • jasmonate biosynthesis

Reaction(s) found

10 reactions found over 19 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-735&oldid=26943"