Difference between revisions of "S-ADENMETSYN-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** S-Adenosyl-Me...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** formaldehyde oxidation I
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** S-Adenosyl-Methionine synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.6 EC-2.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[6PGLUCONOLACT-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Pi]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-02_004960]]
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** 1 H2O[c] '''+''' 1 L-methionine[c] '''+''' 1 ATP[c] '''=>''' 1 S-adenosyl-L-methionine[c] '''+''' 1 diphosphate[c] '''+''' 1 phosphate[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[GLU6PDEHYDROG-RXN]]
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* Gene: [[Ec-06_008470]]
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** 1 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-12_007700]]
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
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*** [[annotation-esiliculosus_genome]]
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== Pathways  ==
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* [[PGLUCISOM-RXN]]
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* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SAM-PWY SAM-PWY]
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** 3 associated gene(s):
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[Ec-24_002470]]
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* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE-DEG1-PWY METHIONINE-DEG1-PWY]
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*** [[Ec-13_003530]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[Ec-13_003810]]
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* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
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** 1 reconstruction source(s) associated:
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5912 PWY-5912]
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* [[RXN-3341]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
−
** 0 associated gene:
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* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
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** 1 reconstruction source(s) associated:
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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== Reaction(s) not found ==
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN]
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** Source: [[orthology-aragem]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R12-RXN R12-RXN]
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*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: common name=formaldehyde oxidation I}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
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{{#set: reaction found=4}}
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* LIGAND-RXN:
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{{#set: total reaction=6}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
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{{#set: completion rate=67.0}}
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* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P19358 P19358]
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** [http://www.uniprot.org/uniprot/P18298 P18298]
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** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
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** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
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** [http://www.uniprot.org/uniprot/P54419 P54419]
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** [http://www.uniprot.org/uniprot/P56460 P56460]
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** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
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** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
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** [http://www.uniprot.org/uniprot/O50163 O50163]
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** [http://www.uniprot.org/uniprot/P43762 P43762]
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** [http://www.uniprot.org/uniprot/P23686 P23686]
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** [http://www.uniprot.org/uniprot/P17562 P17562]
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** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
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** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
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** [http://www.uniprot.org/uniprot/Q90862 Q90862]
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** [http://www.uniprot.org/uniprot/P13444 P13444]
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** [http://www.uniprot.org/uniprot/P31153 P31153]
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** [http://www.uniprot.org/uniprot/Q00266 Q00266]
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** [http://www.uniprot.org/uniprot/P43281 P43281]
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** [http://www.uniprot.org/uniprot/P40320 P40320]
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** [http://www.uniprot.org/uniprot/P43280 P43280]
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** [http://www.uniprot.org/uniprot/P43282 P43282]
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** [http://www.uniprot.org/uniprot/P48498 P48498]
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** [http://www.uniprot.org/uniprot/P10659 P10659]
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** [http://www.uniprot.org/uniprot/Q39465 Q39465]
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** [http://www.uniprot.org/uniprot/P48466 P48466]
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** [http://www.uniprot.org/uniprot/P49612 P49612]
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** [http://www.uniprot.org/uniprot/P49613 P49613]
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** [http://www.uniprot.org/uniprot/P78003 P78003]
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** [http://www.uniprot.org/uniprot/Q49070 Q49070]
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** [http://www.uniprot.org/uniprot/P0A817 P0A817]
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** [http://www.uniprot.org/uniprot/P50299 P50299]
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** [http://www.uniprot.org/uniprot/O22350 O22350]
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** [http://www.uniprot.org/uniprot/P24260 P24260]
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** [http://www.uniprot.org/uniprot/O60198 O60198]
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** [http://www.uniprot.org/uniprot/Q12642 Q12642]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=S-Adenosyl-Methionine synthetase}}
 +
{{#set: ec number=EC-2.5.1.6}}
 +
{{#set: gene associated=Ec-06_008470}}
 +
{{#set: in pathway=SAM-PWY|METHIONINE-DEG1-PWY|ETHYL-PWY|PWY-5912|PWY-5041}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:28, 21 March 2018

Reaction S-ADENMETSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • S-Adenosyl-Methionine synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 L-methionine[c] + 1 ATP[c] => 1 S-adenosyl-L-methionine[c] + 1 diphosphate[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SAM-PWY, S-adenosyl-L-methionine biosynthesis: SAM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • METHIONINE-DEG1-PWY, L-methionine degradation I (to L-homocysteine): METHIONINE-DEG1-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • ETHYL-PWY, ethylene biosynthesis I (plants): ETHYL-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5912, 2'-deoxymugineic acid phytosiderophore biosynthesis: PWY-5912
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine cycle II: PWY-5041
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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