Difference between revisions of "IGPSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7828 RXN-7828] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Aldolase-type TIM barrel...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7828 RXN-7828] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Aldolase-type TIM barrel
 +
** Indole-3-glycerol phosphate synthase
 +
** FIST domain, N-terminal
 +
** indole-3-glycerol-phosphate synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1 EC-2.4.1]
+
** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PELARGONIDIN-3-GLUCOSIDE-CMPD]][c] '''+''' 1 [[CPD-12575]][c] '''=>''' 1 [[CPD-7137]][c] '''+''' 1 [[UDP]][c]
+
** 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 pelargonidin-3-O-β-D-glucoside[c] '''+''' 1 UDP-α-D-glucose[c] '''=>''' 1 pelargonidin-3,5-di-O-β-D-glucoside[c] '''+''' 1 UDP[c]
+
** 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 H2O[c] '''+''' 1 CO2[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-28_003310]]
+
* Gene: [[Ec-08_003030]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-14_000870]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-03_003850]]
−
* [[Ec-04_004610]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** [[pantograph]]-[[aragem]]
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-11_002820]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-08_003020]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-27_004020]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5268]], salvianin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5268 PWY-5268]
+
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5139]], pelargonidin conjugates biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5139 PWY-5139]
+
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P42393 P42393]
 +
** [http://www.uniprot.org/uniprot/P20577 P20577]
 +
** [http://www.uniprot.org/uniprot/P18304 P18304]
 +
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
 +
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
 +
** [http://www.uniprot.org/uniprot/P20578 P20578]
 +
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
 +
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
 +
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
 +
** [http://www.uniprot.org/uniprot/P03964 P03964]
 +
** [http://www.uniprot.org/uniprot/P00910 P00910]
 +
** [http://www.uniprot.org/uniprot/P00909 P00909]
 +
** [http://www.uniprot.org/uniprot/P00911 P00911]
 +
** [http://www.uniprot.org/uniprot/P17217 P17217]
 +
** [http://www.uniprot.org/uniprot/P20409 P20409]
 +
** [http://www.uniprot.org/uniprot/P00937 P00937]
 +
** [http://www.uniprot.org/uniprot/P00908 P00908]
 +
** [http://www.uniprot.org/uniprot/P05328 P05328]
 +
** [http://www.uniprot.org/uniprot/P06531 P06531]
 +
** [http://www.uniprot.org/uniprot/P18483 P18483]
 +
** [http://www.uniprot.org/uniprot/P25170 P25170]
 +
** [http://www.uniprot.org/uniprot/P26938 P26938]
 +
** [http://www.uniprot.org/uniprot/P24773 P24773]
 +
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 +
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 +
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 +
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 +
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 +
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 +
** [http://www.uniprot.org/uniprot/P94327 P94327]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.4.1}}
+
{{#set: common name=Aldolase-type TIM barrel}}
−
{{#set: gene associated=Ec-28_003310|Ec-14_000870|Ec-04_004610}}
+
{{#set: common name=Indole-3-glycerol phosphate synthase}}
−
{{#set: in pathway=PWY-5268|PWY-5139}}
+
{{#set: common name=FIST domain, N-terminal}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=indole-3-glycerol-phosphate synthase}}
−
{{#set: reconstruction source=orthology-aragem}}
+
{{#set: ec number=EC-4.1.1.48}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Ec-08_003030|Ec-03_003850|Ec-11_002820|Ec-08_003020|Ec-27_004020}}
 +
{{#set: in pathway=TRPSYN-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:31, 21 March 2018

Reaction IGPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Aldolase-type TIM barrel
    • Indole-3-glycerol phosphate synthase
    • FIST domain, N-terminal
    • indole-3-glycerol-phosphate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=IGPSYN-RXN&oldid=27446"