Difference between revisions of "FPPSYN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2142 RXN0-2142] == * direction: ** LEFT-TO-RIGHT * common name: ** NAD(P)-binding domain * ec...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Prenyltransferase/squalen...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** Prenyltransferase/squalene oxidase |
+ | ** Farnesyl pyrophosphate synthase | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.5.1.10 EC-2.5.1.10] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[FARNESYL-PP]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 isopentenyl diphosphate[c] '''+''' 1 geranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[Ec- | + | * Gene: [[Ec-10_003020]] |
− | ** | + | ** Source: [[annotation-esiliculosus_genome]] |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
+ | * Gene: [[Ec-07_006170]] | ||
+ | ** Source: [[annotation-esiliculosus_genome]] | ||
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | * Gene: [[Ec-16_004330]] | ||
+ | ** Source: [[orthology-aragem]] | ||
== Pathways == | == Pathways == | ||
− | * [[ | + | * [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721] |
− | ** ''' | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736] | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-aragem]] | ||
+ | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
** Source: [[annotation-esiliculosus_genome]] | ** Source: [[annotation-esiliculosus_genome]] | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P08524 P08524] | ||
+ | ** [http://www.uniprot.org/uniprot/P05369 P05369] | ||
+ | ** [http://www.uniprot.org/uniprot/P14324 P14324] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32] | ||
+ | ** [http://www.uniprot.org/uniprot/P45204 P45204] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0] | ||
+ | ** [http://www.uniprot.org/uniprot/P49350 P49350] | ||
+ | ** [http://www.uniprot.org/uniprot/P22939 P22939] | ||
+ | ** [http://www.uniprot.org/uniprot/Q08291 Q08291] | ||
+ | ** [http://www.uniprot.org/uniprot/P49349 P49349] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09152 Q09152] | ||
+ | ** [http://www.uniprot.org/uniprot/P49351 P49351] | ||
+ | ** [http://www.uniprot.org/uniprot/P49352 P49352] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43315 Q43315] | ||
+ | ** [http://www.uniprot.org/uniprot/O24241 O24241] | ||
+ | ** [http://www.uniprot.org/uniprot/O24242 O24242] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92334 Q92334] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92218 Q92218] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92235 Q92235] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92250 Q92250] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4] | ||
+ | ** [http://www.uniprot.org/uniprot/P49353 P49353] | ||
+ | ** [http://www.uniprot.org/uniprot/O04882 O04882] | ||
+ | ** [http://www.uniprot.org/uniprot/O65004 O65004] | ||
+ | ** [http://www.uniprot.org/uniprot/O14230 O14230] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: common name= | + | {{#set: common name=Prenyltransferase/squalene oxidase}} |
− | {{#set: ec number=EC- | + | {{#set: common name=Farnesyl pyrophosphate synthase}} |
− | {{#set: gene associated=Ec- | + | {{#set: ec number=EC-2.5.1.10}} |
− | {{#set: in pathway= | + | {{#set: gene associated=Ec-10_003020|Ec-07_006170|Ec-16_004330}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: in pathway=PWY-7721|PWY-7736|PWY-5123|PWY-6859|PWY-7102}} |
− | {{#set: reconstruction source=annotation-esiliculosus_genome}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}} |
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 19:32, 21 March 2018
Contents
Reaction FPPSYN-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- Prenyltransferase/squalene oxidase
- Farnesyl pyrophosphate synthase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 DELTA3-ISOPENTENYL-PP[c] + 1 GERANYL-PP[c] => 1 PPI[c] + 1 FARNESYL-PP[c]
- With common name(s):
- 1 isopentenyl diphosphate[c] + 1 geranyl diphosphate[c] => 1 diphosphate[c] + 1 (2E,6E)-farnesyl diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Ec-10_003020
- Source: annotation-esiliculosus_genome
- Assignment: EC-NUMBER
- Source: annotation-esiliculosus_genome
- Gene: Ec-07_006170
- Source: annotation-esiliculosus_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-esiliculosus_genome
- Gene: Ec-16_004330
- Source: orthology-aragem
Pathways
- PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
- 2 reactions found over 4 reactions in the full pathway
- PWY-7736, stellatic acid biosynthesis: PWY-7736
- 3 reactions found over 8 reactions in the full pathway
- PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
- 3 reactions found over 3 reactions in the full pathway
- PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
- 3 reactions found over 4 reactions in the full pathway
- PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
- 3 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-aragem
- Tool: pantograph
- Source: orthology-aragem
- Category: annotation
- Source: annotation-esiliculosus_genome
- Tool: pathwaytools
- Source: annotation-esiliculosus_genome
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: