Difference between revisions of "RXN-12270"
From metabolic_network
(Created page with "Category:Gene == Gene Ec-17_001480 == * left end position: ** 1557036 * transcription direction: ** POSITIVE * right end position: ** 1565361 * centisome position: ** 32.4...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycosyl hydrolase, family...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] == |
| − | * | + | * direction: |
| − | + | ** LEFT-TO-RIGHT | |
| − | + | * common name: | |
| − | ** | + | ** Glycosyl hydrolase, family 88 |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/3.2.1.179 EC-3.2.1.179] |
| − | * | + | |
| − | ** | + | |
* Synonym(s): | * Synonym(s): | ||
| − | |||
| − | |||
| − | |||
| − | == | + | == Reaction Formula == |
| − | * | + | * With identifiers: |
| − | ** | + | ** 1 [[WATER]][c] '''+''' 1 [[CPD-13187]][c] '''=>''' 1 [[CPD-13122]][c] '''+''' 1 [[CPD-13188]][c] |
| − | + | * With common name(s): | |
| − | + | ** 1 H2O[c] '''+''' 1 unsaturated gellan tetrasaccharide[c] '''=>''' 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] '''+''' 1 β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-β-D-Glcp[c] | |
| − | + | ||
| − | + | == Genes associated with this reaction == | |
| − | + | Genes have been associated with this reaction based on different elements listed below. | |
| − | + | * Gene: [[Ec-02_002980]] | |
| − | + | ** Source: [[annotation-esiliculosus_genome]] | |
| − | + | *** Assignment: AUTOMATED-NAME-MATCH | |
| − | + | * Gene: [[Ec-02_002970]] | |
| − | + | ** Source: [[annotation-esiliculosus_genome]] | |
| − | = | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | + | == Pathways == | |
| − | + | * [[PWY-6827]], gellan degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6827 PWY-6827] | |
| − | + | ** '''1''' reactions found over '''2''' reactions in the full pathway | |
| − | + | == Reconstruction information == | |
| − | * | + | * Category: [[annotation]] |
| − | * [[ | + | ** Source: [[annotation-esiliculosus_genome]] |
| − | * [[ | + | *** Tool: [[pathwaytools]] |
| − | * [[ | + | |
| − | * | + | |
| − | * [[ | + | |
| − | * [[ | + | |
| − | * | + | |
| − | * [[PWY- | + | |
| − | + | ||
| − | + | ||
| − | * | + | |
| − | * | + | |
| − | * [[ | + | |
| − | * [[ | + | |
| − | * [[ | + | |
== External links == | == External links == | ||
| − | {{#set: | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31638 31638] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R09831 R09831] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=Glycosyl hydrolase, family 88}} |
| − | {{#set: | + | {{#set: ec number=EC-3.2.1.179}} |
| + | {{#set: gene associated=Ec-02_002980|Ec-02_002970}} | ||
| + | {{#set: in pathway=PWY-6827}} | ||
| + | {{#set: reconstruction category=annotation}} | ||
| + | {{#set: reconstruction source=annotation-esiliculosus_genome}} | ||
| + | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 19:34, 21 March 2018
Contents
Reaction RXN-12270
- direction:
- LEFT-TO-RIGHT
- common name:
- Glycosyl hydrolase, family 88
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 H2O[c] + 1 unsaturated gellan tetrasaccharide[c] => 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] + 1 β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-β-D-Glcp[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Ec-02_002980
- Source: annotation-esiliculosus_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-esiliculosus_genome
- Gene: Ec-02_002970
- Source: annotation-esiliculosus_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-esiliculosus_genome
Pathways
Reconstruction information
- Category: annotation
- Source: annotation-esiliculosus_genome
- Tool: pathwaytools
- Source: annotation-esiliculosus_genome
External links
