Difference between revisions of "RXN-12263"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14177 RXN-14177] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14177 RXN-14177] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.163 EC-2.1.1.163]
+
** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[CPD-15152]][c] '''=>''' 1 [[CPD-15153]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
+
** 2 [[FARNESYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-465]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone[c] '''=>''' 1 3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone[c] '''+''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
+
** 2 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 presqualene diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-27_000650]]
+
* Gene: [[Ec-11_001030]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-08_006620]]
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*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
* [[Ec-09_002660]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-17_000350]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-27_005280]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-06_002620]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-16_000550]]
+
−
** [[pantograph]]-[[aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26465 26465]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O69445 O69445]
 +
** [http://www.uniprot.org/uniprot/P36596 P36596]
 +
** [http://www.uniprot.org/uniprot/O65688 O65688]
 +
** [http://www.uniprot.org/uniprot/O23118 O23118]
 +
** [http://www.uniprot.org/uniprot/O22107 O22107]
 +
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
 +
** [http://www.uniprot.org/uniprot/O22106 O22106]
 +
** [http://www.uniprot.org/uniprot/P53800 P53800]
 +
** [http://www.uniprot.org/uniprot/P53799 P53799]
 +
** [http://www.uniprot.org/uniprot/P53798 P53798]
 +
** [http://www.uniprot.org/uniprot/P29704 P29704]
 +
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
 +
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
 +
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
 +
** [http://www.uniprot.org/uniprot/P37268 P37268]
 +
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.1.1.163}}
+
{{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}}
−
{{#set: gene associated=Ec-27_000650|Ec-08_006620|Ec-09_002660|Ec-17_000350|Ec-27_005280|Ec-06_002620|Ec-16_000550}}
+
{{#set: ec number=EC-2.5.1.103}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Ec-11_001030}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-7072|PWY-6105|PWY-6767|PWY-5875}}
−
{{#set: reconstruction source=orthology-aragem}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction RXN-12263

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 (2E,6E)-farnesyl diphosphate[c] => 1 diphosphate[c] + 1 presqualene diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6105, botryococcenes and methylated squalene biosynthesis: PWY-6105
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6767, 4,4'-diapolycopenedioate biosynthesis: PWY-6767
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-5875, staphyloxanthin biosynthesis: PWY-5875
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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