Difference between revisions of "Ec-11 005950"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** hyd...")
(Created page with "Category:Gene == Gene Ec-11_005950 == * left end position: ** 5952886 * transcription direction: ** NEGATIVE * right end position: ** 5971297 * centisome position: ** 94.6...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] ==
+
== Gene Ec-11_005950 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 5952886
−
* common name:
+
* transcription direction:
−
** hydroxymethylbilane synthase, putative chloroplast precursor
+
** NEGATIVE
−
* ec number:
+
* right end position:
−
** [http://enzyme.expasy.org/EC/2.5.1.61 EC-2.5.1.61]
+
** 5971297
 +
* centisome position:
 +
** 94.64562   
 
* Synonym(s):
 
* Synonym(s):
 +
** Esi_0031_0114
 +
** Esi0031_0114
 +
** PP
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[3.1.3.16-RXN]]
−
** 4 [[PORPHOBILINOGEN]][c] '''+''' 1 [[WATER]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
+
−
* With common name(s):
+
−
** 4 porphobilinogen[c] '''+''' 1 H2O[c] '''=>''' 4 ammonium[c] '''+''' 1 preuroporphyrinogen[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Ec-25_002760]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[aragem]]
+
−
== Pathways  ==
+
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-aragem]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=5952886}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
+
{{#set: transcription direction=NEGATIVE}}
−
* LIGAND-RXN:
+
{{#set: right end position=5971297}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
+
{{#set: centisome position=94.64562    }}
−
* UNIPROT:
+
{{#set: common name=Esi_0031_0114|Esi0031_0114|PP}}
−
** [http://www.uniprot.org/uniprot/Q57989 Q57989]
+
{{#set: reaction associated=3.1.3.16-RXN}}
−
** [http://www.uniprot.org/uniprot/O29026 O29026]
+
−
** [http://www.uniprot.org/uniprot/P64336 P64336]
+
−
** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
+
−
** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
+
−
** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
+
−
** [http://www.uniprot.org/uniprot/P28464 P28464]
+
−
** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
+
−
** [http://www.uniprot.org/uniprot/P56140 P56140]
+
−
** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
+
−
** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
+
−
** [http://www.uniprot.org/uniprot/O26960 O26960]
+
−
** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
+
−
** [http://www.uniprot.org/uniprot/P06983 P06983]
+
−
** [http://www.uniprot.org/uniprot/P13446 P13446]
+
−
** [http://www.uniprot.org/uniprot/P08397 P08397]
+
−
** [http://www.uniprot.org/uniprot/P22907 P22907]
+
−
** [http://www.uniprot.org/uniprot/P19356 P19356]
+
−
** [http://www.uniprot.org/uniprot/Q43082 Q43082]
+
−
** [http://www.uniprot.org/uniprot/P40129 P40129]
+
−
** [http://www.uniprot.org/uniprot/P30527 P30527]
+
−
** [http://www.uniprot.org/uniprot/P28789 P28789]
+
−
** [http://www.uniprot.org/uniprot/Q60169 Q60169]
+
−
** [http://www.uniprot.org/uniprot/Q43316 Q43316]
+
−
** [http://www.uniprot.org/uniprot/Q49808 Q49808]
+
−
** [http://www.uniprot.org/uniprot/P73660 P73660]
+
−
** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
+
−
** [http://www.uniprot.org/uniprot/Q09899 Q09899]
+
−
** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=hydroxymethylbilane synthase, putative chloroplast precursor}}
+
−
{{#set: ec number=EC-2.5.1.61}}
+
−
{{#set: gene associated=Ec-25_002760}}
+
−
{{#set: in pathway=PWY-5189|PWY-5188}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:38, 21 March 2018

Gene Ec-11_005950

  • left end position:
    • 5952886
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 5971297
  • centisome position:
    • 94.64562
  • Synonym(s):
    • Esi_0031_0114
    • Esi0031_0114
    • PP

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-11_005950&oldid=28304"