Difference between revisions of "Ec-08 006390"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7645 RXN-7645] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Gene == Gene Ec-08_006390 == * left end position: ** 6205624 * transcription direction: ** POSITIVE * right end position: ** 6216159 * centisome position: ** 92.6...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7645 RXN-7645] ==
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== Gene Ec-08_006390 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 6205624
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
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** POSITIVE
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* right end position:
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** 6216159
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* centisome position:
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** 92.661835   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0005_0083
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** Esi0005_0083
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACYL-COA-OXIDASE-RXN]]
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** 3 [[PROTON]][c] '''+''' 3 [[MALONYL-COA]][c] '''+''' 1 [[CINNAMOYL-COA]][c] '''=>''' 4 [[CO-A]][c] '''+''' 3 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6993]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 3 H+[c] '''+''' 3 malonyl-CoA[c] '''+''' 1 (E)-cinnamoyl-CoA[c] '''=>''' 4 coenzyme A[c] '''+''' 3 CO2[c] '''+''' 1 pinocembrin chalcone[c]
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* Reaction: [[ACYLCOADEHYDROG-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
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* [[Ec-07_003670]]
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** Source: [[annotation-esiliculosus_genome]]
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** [[pantograph]]-[[aragem]]
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*** Assignment: go-term
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* [[Ec-07_006660]]
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* Reaction: [[RXN-10696]]
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** [[pantograph]]-[[aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-02_004580]]
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*** Assignment: automated-name-match
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** [[pantograph]]-[[aragem]]
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* Reaction: [[RXN-10706]]
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== Pathways  ==
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-5059]], pinobanksin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5059 PWY-5059]
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*** Assignment: automated-name-match
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* Reaction: [[RXN-10707]]
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== Reconstruction information  ==
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** Source: [[annotation-esiliculosus_genome]]
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* Category: [[orthology]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-11026]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-12518]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-12669]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14264]]
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-14576]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14771]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14775]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14785]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14789]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14796]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16134]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17113]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6920]]
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* [[PWY-7340]]
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* [[PWY-7291]]
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* [[PWY-735]]
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* [[PWY-7606]]
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* [[PWY-7338]]
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* [[FAO-PWY]]
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* [[PWY66-391]]
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* [[PWY-5136]]
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* [[PWY-7726]]
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* [[PWY-7007]]
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* [[PWY-7337]]
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* [[PWY-7288]]
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* [[PWY-6837]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=6205624}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07987 R07987]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=6216159}}
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{{#set: ec number=EC-2.3.1}}
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{{#set: centisome position=92.661835    }}
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{{#set: gene associated=Ec-07_003670|Ec-07_006660|Ec-02_004580}}
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{{#set: common name=Esi_0005_0083|Esi0005_0083}}
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{{#set: in pathway=PWY-5059}}
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{{#set: reaction associated=ACYL-COA-OXIDASE-RXN|ACYLCOADEHYDROG-RXN|LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN|RXN-10696|RXN-10706|RXN-10707|RXN-11026|RXN-12518|RXN-12669|RXN-14264|RXN-14576|RXN-14771|RXN-14775|RXN-14785|RXN-14789|RXN-14796|RXN-16134|RXN-17113}}
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{{#set: reconstruction category=orthology}}
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{{#set: pathway associated=PWY-6920|PWY-7340|PWY-7291|PWY-735|PWY-7606|PWY-7338|FAO-PWY|PWY66-391|PWY-5136|PWY-7726|PWY-7007|PWY-7337|PWY-7288|PWY-6837}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:38, 21 March 2018

Gene Ec-08_006390

  • left end position:
    • 6205624
  • transcription direction:
    • POSITIVE
  • right end position:
    • 6216159
  • centisome position:
    • 92.661835
  • Synonym(s):
    • Esi_0005_0083
    • Esi0005_0083

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-08_006390&oldid=28307"