Difference between revisions of "RXNARA-8002"

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(Created page with "Category:Gene == Gene Ec-14_004250 == * left end position: ** 3958314 * transcription direction: ** NEGATIVE * right end position: ** 3965646 * centisome position: ** 60.3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * common name: ** Phytoene synthase; chlo...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-14_004250 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
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* left end position:
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* direction:
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** 3958314
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Phytoene synthase; chloroplast precursor
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* right end position:
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** 3965646
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* centisome position:
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** 60.336216   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0099_0045
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** prephytoene-diphosphate synthase
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** Esi0099_0045
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** PSase
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** geranylgeranyl-diphosphate geranylgeranyltransferase
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[TYROSINE-DECARBOXYLASE-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 prephytoene diphosphate[c] '''=>''' 1 15-cis-phytoene[c] '''+''' 1 diphosphate[c]
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* [[PWY-3581]]
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* [[PWY-6133]]
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== Genes associated with this reaction  ==
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* [[PWY-5254]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-7297]]
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* Gene: [[Ec-04_002810]]
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* [[PWY-5474]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-6802]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3958314}}
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* LIGAND-RXN:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
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{{#set: right end position=3965646}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=60.336216    }}
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{{#set: common name=Phytoene synthase; chloroplast precursor}}
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{{#set: common name=Esi_0099_0045|Esi0099_0045}}
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{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: reaction associated=TYROSINE-DECARBOXYLASE-RXN}}
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{{#set: gene associated=Ec-04_002810}}
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{{#set: pathway associated=PWY-3581|PWY-6133|PWY-5254|PWY-7297|PWY-5474|PWY-6802}}
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{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:38, 21 March 2018

Reaction RXNARA-8002

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phytoene synthase; chloroplast precursor
  • Synonym(s):
    • prephytoene-diphosphate synthase
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prephytoene diphosphate[c] => 1 15-cis-phytoene[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5942, trans-lycopene biosynthesis I (bacteria): PWY-5942
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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