Difference between revisions of "Transport BIOMASS"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Transketolase, C-terminal/Pyruv...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=Transport_BIOMASS Transport_BIOMASS] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Fo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=Transport_BIOMASS Transport_BIOMASS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
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* common name:
 
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** Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
 
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* ec number:
 
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** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PYRUVATE]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
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** 1 [[BIOMASS]][c] '''=>''' 1 [[BIOMASS]][e]
 
* With common name(s):
 
* With common name(s):
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** 1 pyruvate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 1-deoxy-D-xylulose 5-phosphate[c]
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**
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== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
 
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* [[Ec-15_004230]]
 
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** ESILICULOSUS_GENOME
 
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***EC-NUMBER
 
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** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
 
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** '''2''' reactions found over '''7''' reactions in the full pathway
 
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
 
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** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
 
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** '''3''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* Category: [[orthology]]
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* Category: [[manual]]
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** Source: [[orthology-aragem]]
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** Source: [[manual-2_biomass_rxn]]
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*** Tool: [[pantograph]]
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*** Comment: [[transport biomass to external compartment]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II}}
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{{#set: in pathway=}}
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{{#set: ec number=EC-2.2.1.7}}
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{{#set: reconstruction category=manual}}
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{{#set: gene associated=Ec-15_004230}}
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{{#set: reconstruction source=manual-2_biomass_rxn}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-6891|PYRIDOXSYN-PWY|PWY-6892|PWY-7560}}
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{{#set: reconstruction comment=transport biomass to external compartment}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:46, 21 March 2018

Reaction Transport_BIOMASS

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Transport_BIOMASS&oldid=29144"