Difference between revisions of "DUDPKIN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=cis-vaccen-2-enoyl-ACPs cis-vaccen-2-enoyl-ACPs] == * common name: ** a (2-trans-11-cis)-vaccen...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUDPKIN-RXN DUDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=cis-vaccen-2-enoyl-ACPs cis-vaccen-2-enoyl-ACPs] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUDPKIN-RXN DUDPKIN-RXN] ==
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* direction:
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** a (2-trans-11-cis)-vaccen-2-enoyl-[acp]
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** nucleoside diphosphate kinase
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** Nucleoside diphosphate kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
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** a (2E,11Z)-octadeca-2,11-dienoyl-[acp]
 
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** a (2E,11Z)-octadeca-2,11-dienoyl-[acyl-carrier protein]
 
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** a ( 2-trans-11-cis)-octadeca-2,11-dienoyl-[acyl-carrier protein]
 
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** a (2-trans-11-cis)-octadeca-2,11-dienoyl-[acp]
 
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** a (2-trans-11-cis)-vaccen-2-enoyl-[acyl-carrier protein]
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-9558]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c]
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* [[RXN-9557]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 ATP[c] '''+''' 1 dUDP[c] '''=>''' 1 ADP[c] '''+''' 1 dUTP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-22_003280]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-04_001140]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-07_000140]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-26_003930]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-03_001380]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-11_005170]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-11_004330]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''14''' reactions found over '''17''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=a (2-trans-11-cis)-vaccen-2-enoyl-[acp]}}
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* RHEA:
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{{#set: common name=a (2E,11Z)-octadeca-2,11-dienoyl-[acp]|a (2E,11Z)-octadeca-2,11-dienoyl-[acyl-carrier protein]|a ( 2-trans-11-cis)-octadeca-2,11-dienoyl-[acyl-carrier protein]|a (2-trans-11-cis)-octadeca-2,11-dienoyl-[acp]|a (2-trans-11-cis)-vaccen-2-enoyl-[acyl-carrier protein]}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28582 28582]
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{{#set: consumed by=RXN-9558}}
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* LIGAND-RXN:
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{{#set: produced by=RXN-9557}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02331 R02331]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=nucleoside diphosphate kinase}}
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{{#set: common name=Nucleoside diphosphate kinase}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Ec-22_003280|Ec-04_001140|Ec-07_000140|Ec-26_003930|Ec-03_001380|Ec-11_005170|Ec-11_004330}}
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{{#set: in pathway=PWY-7184|PWY-6545|PWY0-166}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:46, 21 March 2018

Reaction DUDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside diphosphate kinase
    • Nucleoside diphosphate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dUDP[c] => 1 ADP[c] + 1 dUTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 14 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





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