Difference between revisions of "AGMATIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3521 RXN-3521] == * direction: ** LEFT-TO-RIGHT * common name: ** Haem peroxidase, plant/fungal...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** agmatinase, partial **...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3521 RXN-3521] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Haem peroxidase, plant/fungal/bacterial
+
** agmatinase, partial
−
** ascorbate peroxidase
+
** Ureohydrolase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.5.3.11 EC-3.5.3.11]
 
* Synonym(s):
 
* Synonym(s):
−
** L-ascorbic acid peroxidase
 
−
** L-ascorbic acid-specific peroxidase
 
−
** ascorbic acid peroxidase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[ASCORBATE]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[WATER]][c] '''+''' 2 [[CPD-318]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[AGMATHINE]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 L-ascorbate[c] '''+''' 1 hydrogen peroxide[c] '''+''' 2 H+[c] '''=>''' 2 H2O[c] '''+''' 2 monodehydroascorbate radical[c]
+
** 1 H2O[c] '''+''' 1 agmatine[c] '''=>''' 1 putrescine[c] '''+''' 1 urea[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-02_001740]]
+
* Gene: [[Ec-17_004300]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Ec-02_001210]]
+
* Gene: [[Ec-22_003700]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Ec-19_000230]]
+
* Gene: [[Ec-17_004310]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2261]], ascorbate glutathione cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261]
+
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 37: Line 40:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30266 30266]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R09540 R09540]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00644 R00644]
+
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P48534 P48534]
+
** [http://www.uniprot.org/uniprot/P60654 P60654]
−
** [http://www.uniprot.org/uniprot/Q7M287 Q7M287]
+
** [http://www.uniprot.org/uniprot/P60653 P60653]
−
** [http://www.uniprot.org/uniprot/O49159 O49159]
+
** [http://www.uniprot.org/uniprot/P60651 P60651]
−
** [http://www.uniprot.org/uniprot/Q7M3G0 Q7M3G0]
+
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
−
** [http://www.uniprot.org/uniprot/Q05431 Q05431]
+
** [http://www.uniprot.org/uniprot/P73270 P73270]
−
** [http://www.uniprot.org/uniprot/Q43824 Q43824]
+
−
** [http://www.uniprot.org/uniprot/Q41772 Q41772]
+
−
** [http://www.uniprot.org/uniprot/Q41371 Q41371]
+
−
** [http://www.uniprot.org/uniprot/Q42661 Q42661]
+
−
** [http://www.uniprot.org/uniprot/Q42564 Q42564]
+
−
** [http://www.uniprot.org/uniprot/O46921 O46921]
+
−
** [http://www.uniprot.org/uniprot/P93404 P93404]
+
−
** [http://www.uniprot.org/uniprot/Q9FE01 Q9FE01]
+
−
** [http://www.uniprot.org/uniprot/O65634 O65634]
+
−
** [http://www.uniprot.org/uniprot/Q39843 Q39843]
+
−
** [http://www.uniprot.org/uniprot/O49122 O49122]
+
−
** [http://www.uniprot.org/uniprot/O49822 O49822]
+
−
** [http://www.uniprot.org/uniprot/Q42459 Q42459]
+
−
** [http://www.uniprot.org/uniprot/Q39780 Q39780]
+
−
** [http://www.uniprot.org/uniprot/Q96399 Q96399]
+
−
** [http://www.uniprot.org/uniprot/O81333 O81333]
+
−
** [http://www.uniprot.org/uniprot/O81603 O81603]
+
−
** [http://www.uniprot.org/uniprot/O81604 O81604]
+
−
** [http://www.uniprot.org/uniprot/Q42909 Q42909]
+
−
** [http://www.uniprot.org/uniprot/Q9STM9 Q9STM9]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Haem peroxidase, plant/fungal/bacterial}}
+
{{#set: common name=agmatinase, partial}}
−
{{#set: common name=ascorbate peroxidase}}
+
{{#set: common name=Ureohydrolase}}
−
{{#set: common name=L-ascorbic acid peroxidase|L-ascorbic acid-specific peroxidase|ascorbic acid peroxidase}}
+
{{#set: ec number=EC-3.5.3.11}}
−
{{#set: gene associated=Ec-02_001740|Ec-02_001210|Ec-19_000230}}
+
{{#set: gene associated=Ec-17_004300|Ec-22_003700|Ec-17_004310}}
−
{{#set: in pathway=PWY-2261}}
+
{{#set: in pathway=PWY-6305|PWY0-823|PWY-40}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:47, 21 March 2018

Reaction AGMATIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • agmatinase, partial
    • Ureohydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 agmatine[c] => 1 putrescine[c] + 1 urea[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway): PWY0-823
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I: PWY-40
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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