Difference between revisions of "RXN-17783"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Radical SAM * ec number: ** [...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Radical SAM
+
** Acyl-CoA dehydrogenase
 +
** acyl-CoA dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.98.c EC-1.3.98.c]
+
** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[MET]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
+
** 1 [[CPD-15436]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[CPD0-1162]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 S-adenosyl-L-methionine[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 L-methionine[c] '''+''' 2 CO2[c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 1 protoporphyrinogen IX[c]
+
** 1 (5Z)-tetradecenoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 (2E,5Z)-tetradecenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-20_000950]]
+
* Gene: [[Ec-14_001600]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-26_002590]]
+
* Gene: [[Ec-03_003490]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-16_004260]]
−
* [[Ec-14_004300]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-19_002210]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-26_001240]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Radical SAM}}
+
{{#set: common name=Acyl-CoA dehydrogenase}}
−
{{#set: ec number=EC-1.3.98.c}}
+
{{#set: common name=acyl-CoA dehydrogenase}}
−
{{#set: gene associated=Ec-20_000950|Ec-26_002590|Ec-14_004300|Ec-19_002210|Ec-26_001240}}
+
{{#set: ec number=EC-1.3.8}}
−
{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
+
{{#set: gene associated=Ec-14_001600|Ec-03_003490|Ec-16_004260}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:57, 21 March 2018

Reaction RXN-17783

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Acyl-CoA dehydrogenase
    • acyl-CoA dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (5Z)-tetradecenoyl-CoA[c] + 1 H+[c] + 1 an oxidized electron-transfer flavoprotein[c] => 1 a reduced electron-transfer flavoprotein[c] + 1 (2E,5Z)-tetradecenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-17783&oldid=30524"