Difference between revisions of "GDPREDUCT-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=THMPT THMPT] == * smiles: ** CC([CH]1(C(C)NC2(=C(N1)C(NC(=N2)N)=O)))NC4(=CC=C(CC(C(C(COC3(C(C(C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPREDUCT-RXN GDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diph...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=THMPT THMPT] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPREDUCT-RXN GDPREDUCT-RXN] ==
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* smiles:
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* direction:
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** CC([CH]1(C(C)NC2(=C(N1)C(NC(=N2)N)=O)))NC4(=CC=C(CC(C(C(COC3(C(C(C(COP([O-])(=O)OC(C([O-])=O)CCC([O-])=O)O3)O)O))O)O)O)C=C4)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=SCBIBGUJSMHIAI-LHIIQLEZSA-K
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* common name:
 
* common name:
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** tetrahydromethanopterin
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** Ribonucleoside-diphosphate reductase small chain
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* molecular weight:
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** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
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** 773.666   
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** EsV-1-128
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** EsV-1-180
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* ec number:
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** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
 
* Synonym(s):
 
* Synonym(s):
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** THMPT
 
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** 5,6,7,8-tetrahydromethanopterin
 
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** H4MPT
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-15635]]
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** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[DGDP]][c] '''+''' 1 [[Ox-Thioredoxin]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a reduced thioredoxin[c] '''+''' 1 GDP[c] '''=>''' 1 H2O[c] '''+''' 1 dGDP[c] '''+''' 1 an oxidized thioredoxin[c]
 +
 
 +
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-17_003700]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-11_002170]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-06_005570]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-19_000440]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-11_002180]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-06_005120]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-21_002920]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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== Pathways  ==
 +
* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7222 PWY-7222]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7226 PWY-7226]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=49791993 49791993]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28030 28030]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58103 58103]
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** [http://www.genome.jp/dbget-bin/www_bget?R02019 R02019]
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01217 C01217]
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{{#set: common name=Ribonucleoside-diphosphate reductase small chain}}
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* HMDB : HMDB60403
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{{#set: common name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
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{{#set: smiles=CC([CH]1(C(C)NC2(=C(N1)C(NC(=N2)N)=O)))NC4(=CC=C(CC(C(C(COC3(C(C(C(COP([O-])(=O)OC(C([O-])=O)CCC([O-])=O)O3)O)O))O)O)O)C=C4)}}
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{{#set: common name=EsV-1-128}}
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{{#set: inchi key=InChIKey=SCBIBGUJSMHIAI-LHIIQLEZSA-K}}
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{{#set: common name=EsV-1-180}}
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{{#set: common name=tetrahydromethanopterin}}
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{{#set: ec number=EC-1.17.4.1}}
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{{#set: molecular weight=773.666    }}
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{{#set: gene associated=Ec-17_003700|Ec-11_002170|Ec-06_005570|Ec-19_000440|Ec-11_002180|Ec-06_005120|Ec-21_002920}}
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{{#set: common name=THMPT|5,6,7,8-tetrahydromethanopterin|H4MPT}}
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{{#set: in pathway=PWY-7222|PWY-7226}}
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{{#set: produced by=RXN-15635}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:57, 21 March 2018

Reaction GDPREDUCT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonucleoside-diphosphate reductase small chain
    • ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
    • EsV-1-128
    • EsV-1-180
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a reduced thioredoxin[c] + 1 GDP[c] => 1 H2O[c] + 1 dGDP[c] + 1 an oxidized thioredoxin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7222, guanosine deoxyribonucleotides de novo biosynthesis II: PWY-7222
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7226, guanosine deoxyribonucleotides de novo biosynthesis I: PWY-7226
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=GDPREDUCT-RXN&oldid=30534"