Difference between revisions of "PWY-5392"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] == * direction: ** REVERSIBLE * common name: ** Tryptophan synthase beta subun...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-200783]
 
* common name:
 
* common name:
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** Tryptophan synthase beta subunit-like PLP-dependent enzyme
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** reductive TCA cycle II
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** Tryptophan synthase (alpha / beta chains)
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** Tryptophan synthase, beta chain
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.2.8 EC-4.1.2.8]
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* Synonym(s):
 
* Synonym(s):
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** reductive tricarboxylic acid cycle
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** reductive tricarboxylic acid pathway
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** reductive citric acid cycle
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** reverse citric acid cycle
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** carbon fixation
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** CO2 fixation
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** reductive carboxylic acid cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''12''' reactions in the full pathway
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** 1 [[INDOLE-3-GLYCEROL-P]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[INDOLE]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 indole[c]
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*** [[Ec-16_001000]]
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*** [[Ec-12_000170]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-27_001950]]
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* [[ACONITATEHYDR-RXN]]
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** ESILICULOSUS_GENOME
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** 2 associated gene(s):
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***EC-NUMBER
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*** [[Ec-16_001000]]
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* [[Ec-01_012080]]
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*** [[Ec-12_000170]]
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** ESILICULOSUS_GENOME
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** 1 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-17_002680]]
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* [[FUMHYDR-RXN]]
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** ESILICULOSUS_GENOME
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** 2 associated gene(s):
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***AUTOMATED-NAME-MATCH
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*** [[Ec-25_001360]]
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* [[Ec-24_004010]]
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*** [[Ec-23_003460]]
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** ESILICULOSUS_GENOME
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** 2 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-00_008830]]
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*** [[orthology-aragem]]
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** ESILICULOSUS_GENOME
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* [[MALATE-DEH-RXN]]
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***AUTOMATED-NAME-MATCH
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** 2 associated gene(s):
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* [[Ec-24_002360]]
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*** [[Ec-10_006200]]
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** ESILICULOSUS_GENOME
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*** [[Ec-02_003100]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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* [[Ec-06_007490]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** [[orthology-aragem]]
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***AUTOMATED-NAME-MATCH
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* [[PYRUFLAVREDUCT-RXN]]
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* [[Ec-20_002800]]
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** 3 associated gene(s):
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** ESILICULOSUS_GENOME
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*** [[Ec-18_003420]]
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***AUTOMATED-NAME-MATCH
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*** [[Ec-15_004230]]
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== Pathways  ==
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*** [[Ec-23_002710]]
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** 1 reconstruction source(s) associated:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-6949]], DIBOA-glucoside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6949 PWY-6949]
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* [[SUCCCOASYN-RXN]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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** 2 associated gene(s):
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== Reconstruction information  ==
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*** [[Ec-10_000030]]
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* [[annotation]]:
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*** [[Ec-02_001020]]
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** [[pathwaytools]]:
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** 2 reconstruction source(s) associated:
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*** [[esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=CITRATE--COA-LIGASE-RXN CITRATE--COA-LIGASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R23-RXN R23-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7929 RXN-7929]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8457 RXN-8457]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-200783}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14081 14081]
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{{#set: common name=reductive TCA cycle II}}
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* LIGAND-RXN:
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{{#set: common name=reductive tricarboxylic acid cycle|reductive tricarboxylic acid pathway|reductive citric acid cycle|reverse citric acid cycle|carbon fixation|CO2 fixation|reductive carboxylic acid cycle}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02340 R02340]
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{{#set: reaction found=6}}
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{{#set: direction=REVERSIBLE}}
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{{#set: total reaction=12}}
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{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
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{{#set: completion rate=50.0}}
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{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
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{{#set: common name=Tryptophan synthase, beta chain}}
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{{#set: ec number=EC-4.1.2.8}}
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{{#set: gene associated=Ec-27_001950|Ec-01_012080|Ec-17_002680|Ec-24_004010|Ec-00_008830|Ec-24_002360|Ec-06_007490|Ec-20_002800}}
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{{#set: in pathway=TRPSYN-PWY|PWY-6949}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 19:12, 21 March 2018

Pathway PWY-5392

  • taxonomic range:
  • common name:
    • reductive TCA cycle II
  • Synonym(s):
    • reductive tricarboxylic acid cycle
    • reductive tricarboxylic acid pathway
    • reductive citric acid cycle
    • reverse citric acid cycle
    • carbon fixation
    • CO2 fixation
    • reductive carboxylic acid cycle

Reaction(s) found

6 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5392&oldid=25230"