Difference between revisions of "RXN-12567"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-580...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12567 RXN-12567] == * direction: ** LEFT-TO-RIGHT * common name: ** ClpP/crotonase-like domain...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12567 RXN-12567] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** phenylpropanoid biosynthesis
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** ClpP/crotonase-like domain
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** Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
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** enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
 
* Synonym(s):
 
* Synonym(s):
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** monolignol biosynthesis
 
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** lignin biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''15''' reactions in the full pathway
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* With identifiers:
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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** 1 [[OH-HEXANOYL-COA]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD0-2121]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Ec-10_001480]]
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** 1 (S)-3-hydroxyhexanoyl-CoA[c] '''=>''' 1 H2O[c] '''+''' 1 trans-hex-2-enoyl-CoA[c]
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*** [[Ec-04_001280]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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* Gene: [[Ec-16_001250]]
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** 1 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-28_003750]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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* Gene: [[Ec-14_006530]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-1101]]
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* Gene: [[Ec-06_001380]]
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** 3 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-12_005240]]
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*** Assignment: EC-NUMBER
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*** [[Ec-12_001350]]
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* Gene: [[Ec-16_003560]]
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*** [[Ec-23_001220]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-aragem]]
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== Pathways  ==
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* [[RXN-1102]]
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** 1 associated gene(s):
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** '''7''' reactions found over '''11''' reactions in the full pathway
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*** [[Ec-18_002860]]
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[annotation]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-1106]]
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*** Tool: [[pathwaytools]]
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** 3 associated gene(s):
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*** [[Ec-12_005240]]
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*** [[Ec-12_001350]]
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*** [[Ec-23_001220]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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* [[RXN-1125]]
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** 1 associated gene(s):
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*** [[Ec-18_002860]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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* [[RXN-1143]]
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** 1 associated gene(s):
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*** [[Ec-01_004720]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.36-RXN 1.14.13.36-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.133-RXN 2.3.1.133-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1142 RXN-1142]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2581 RXN-2581]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2601 RXN-2601]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2602 RXN-2602]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2621 RXN-2621]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2622 RXN-2622]
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== External links  ==
 
== External links  ==
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* ARACYC:
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* RHEA:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-361 PWY-361]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30549 30549]
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{{#set: taxonomic range=TAX-58024}}
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* LIGAND-RXN:
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{{#set: common name=phenylpropanoid biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04749 R04749]
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{{#set: common name=monolignol biosynthesis|lignin biosynthesis}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=7}}
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{{#set: common name=ClpP/crotonase-like domain}}
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{{#set: total reaction=15}}
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{{#set: common name=Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ}}
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{{#set: completion rate=47.0}}
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{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: gene associated=Ec-16_001250|Ec-14_006530|Ec-06_001380|Ec-16_003560}}
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{{#set: in pathway=PWY-6863}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:04, 21 March 2018

Reaction RXN-12567

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ClpP/crotonase-like domain
    • Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
    • enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-3-hydroxyhexanoyl-CoA[c] => 1 H2O[c] + 1 trans-hex-2-enoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12567&oldid=24370"