Difference between revisions of "RIBOKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formate-tet...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribokinase * ec number:...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** formate-tetrahydrofolate ligase
+
** ribokinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.4.3 EC-6.3.4.3]
+
** [http://enzyme.expasy.org/EC/2.7.1.15 EC-2.7.1.15]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[FORMATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[THF-GLU-N]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-15318]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 formate[c] '''+''' 1 ATP[c] '''+''' 1 a tetrahydrofolate[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 an N10-formyl-tetrahydrofolate[c]
+
** 1 ATP[c] '''+''' 1 α-D-ribofuranose[c] '''=>''' 1 ADP[c] '''+''' 1 α-D-ribose 5-phosphate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-25_001900]]
+
* Gene: [[Ec-07_005840]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
−
* Gene: [[Ec-01_009540]]
+
* Gene: [[Ec-01_005220]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
+
* [[RIBOKIN-PWY]], ribose degradation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
+
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20221 20221]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13697 13697]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
+
** [http://www.uniprot.org/uniprot/P44331 P44331]
−
** [http://www.uniprot.org/uniprot/P13419 P13419]
+
** [http://www.uniprot.org/uniprot/P36945 P36945]
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
+
** [http://www.uniprot.org/uniprot/Q57849 Q57849]
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
+
** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
−
** [http://www.uniprot.org/uniprot/P21164 P21164]
+
** [http://www.uniprot.org/uniprot/P25332 P25332]
−
** [http://www.uniprot.org/uniprot/P28723 P28723]
+
** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
−
** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
+
** [http://www.uniprot.org/uniprot/O93727 O93727]
−
** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
+
−
** [http://www.uniprot.org/uniprot/Q07064 Q07064]
+
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=formate-tetrahydrofolate ligase}}
+
{{#set: common name=ribokinase}}
−
{{#set: ec number=EC-6.3.4.3}}
+
{{#set: ec number=EC-2.7.1.15}}
−
{{#set: gene associated=Ec-25_001900|Ec-01_009540}}
+
{{#set: gene associated=Ec-07_005840|Ec-01_005220}}
−
{{#set: in pathway=PWY-2201|PWY-1722|PWY-2161|CODH-PWY|PWY-3841}}
+
{{#set: in pathway=RIBOKIN-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:04, 21 March 2018

Reaction RIBOKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ribokinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 α-D-ribofuranose[c] => 1 ADP[c] + 1 α-D-ribose 5-phosphate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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