Difference between revisions of "RXN-9550"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9550 RXN-9550] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/3....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9550 RXN-9550] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
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* ec number:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
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** [http://enzyme.expasy.org/EC/3.1.2.14 EC-3.1.2.14]
* common name:
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** L-isoleucine biosynthesis IV
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* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
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== Reaction Formula ==
'''3''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
* [[ACETOOHBUTSYN-RXN]]
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** 1 [[Palmitoleoyl-ACPs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-9245]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[PROTON]][c]
** 0 associated gene:
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* With common name(s):
** 1 reconstruction source(s) associated:
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** 1 a palmitoleoyl-[acp][c] '''+''' 1 H2O[c] '''=>''' 1 palmitoleate[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 H+[c]
*** [[annotation-esiliculosus_genome]]
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* [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
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== Genes associated with this reaction  ==
** 5 associated gene(s):
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== Pathways  ==
*** [[Ec-20_001390]]
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* [[PWY-5366]], palmitoleate biosynthesis II (plants and bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5366 PWY-5366]
*** [[Ec-12_005520]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
*** [[Ec-12_005560]]
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* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6282 PWY-6282]
*** [[Ec-01_007170]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
*** [[Ec-12_005530]]
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== Reconstruction information  ==
** 2 reconstruction source(s) associated:
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* Category: [[gap-filling]]
*** [[annotation-esiliculosus_genome]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
*** [[orthology-aragem]]
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*** Tool: [[meneco]]
* [[DIHYDROXYMETVALDEHYDRAT-RXN]]
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**** Comment: [[added for gapfilling]]
** 1 associated gene(s):
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*** [[Ec-03_000220]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOBUTYRATE-SYNTHASE-RXN 2-OXOBUTYRATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PROPIONATE--COA-LIGASE-RXN PROPIONATE--COA-LIGASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16062 RXN-16062]
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== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
{{#set: taxonomic range=TAX-224756}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08162 R08162]
{{#set: taxonomic range=TAX-183925}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=L-isoleucine biosynthesis IV}}
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{{#set: ec number=EC-3.1.2.14}}
{{#set: reaction found=3}}
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{{#set: in pathway=PWY-5366|PWY-6282}}
{{#set: total reaction=6}}
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{{#set: reconstruction category=gap-filling}}
{{#set: completion rate=50.0}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 19:18, 21 March 2018

Reaction RXN-9550

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a palmitoleoyl-[acp][c] + 1 H2O[c] => 1 palmitoleate[c] + 1 a holo-[acyl-carrier protein][c] + 1 H+[c]

Genes associated with this reaction

Pathways

  • PWY-5366, palmitoleate biosynthesis II (plants and bacteria): PWY-5366
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6282, palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate): PWY-6282
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links