Difference between revisions of "UROGENDECARBOX-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15680 RXN-15680] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-benzyl-3,6-dihydroxy-6-(h...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Uroporphy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15680 RXN-15680] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine glutathione S-transferase
+
** Uroporphyrinogen decarboxylase, chloroplast precursor
−
** Thioredoxin-like fold
+
−
** Glutathione S-transferase, N-terminal
+
−
** Glutathione S-transferase, C-terminal-like
+
−
** Membrane associated eicosanoid/glutathione metabolism-like domain
+
−
** Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein
+
−
** DSBA-like thioredoxin domain
+
−
** Glutathione S-transferase (GST)
+
−
** putative Glutathione S-transferase
+
−
** Glutathione S-transferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.18 EC-2.5.1.18]
+
** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[GLUTATHIONE]][c] '''+''' 1 [[CPD-17045]][c] '''=>''' 1 [[CPD-17046]][c] '''+''' 2 [[WATER]][c]
+
** 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 4 [[PROTON]][c] '''=>''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 4 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 glutathione[c] '''+''' 1 3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine[c] '''=>''' 1 3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine[c] '''+''' 2 H2O[c]
+
** 1 uroporphyrinogen-III[c] '''+''' 4 H+[c] '''=>''' 1 coproporphyrinogen III[c] '''+''' 4 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-13_002370]]
+
* Gene: [[Ec-24_000620]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-06_008030]]
+
* Gene: [[Ec-01_000360]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-13_000340]]
+
* Gene: [[Ec-24_000650]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-09_003670]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-27_000400]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-27_000390]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-00_008890]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-13_002360]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-18_001510]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-00_000320]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-06_002520]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-00_008380]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-00_008370]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-11_002590]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-00_008360]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-00_008870]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-24_001030]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-20_001950]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7533]], gliotoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7533 PWY-7533]
+
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
−
** '''3''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 88: Line 46:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P06132 P06132]
 +
** [http://www.uniprot.org/uniprot/P16891 P16891]
 +
** [http://www.uniprot.org/uniprot/P32395 P32395]
 +
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
 +
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
 +
** [http://www.uniprot.org/uniprot/P29680 P29680]
 +
** [http://www.uniprot.org/uniprot/P32347 P32347]
 +
** [http://www.uniprot.org/uniprot/P32920 P32920]
 +
** [http://www.uniprot.org/uniprot/P54224 P54224]
 +
** [http://www.uniprot.org/uniprot/O81220 O81220]
 +
** [http://www.uniprot.org/uniprot/P70697 P70697]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine glutathione S-transferase}}
+
{{#set: common name=Uroporphyrinogen decarboxylase, chloroplast precursor}}
−
{{#set: common name=Thioredoxin-like fold}}
+
{{#set: ec number=EC-4.1.1.37}}
−
{{#set: common name=Glutathione S-transferase, N-terminal}}
+
{{#set: gene associated=Ec-24_000620|Ec-01_000360|Ec-24_000650}}
−
{{#set: common name=Glutathione S-transferase, C-terminal-like}}
+
{{#set: in pathway=HEMESYN2-PWY|PWY0-1415|PWY-7159|PWY-7766|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II|PWY-5531}}
−
{{#set: common name=Membrane associated eicosanoid/glutathione metabolism-like domain}}
+
−
{{#set: common name=Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein}}
+
−
{{#set: common name=DSBA-like thioredoxin domain}}
+
−
{{#set: common name=Glutathione S-transferase (GST)}}
+
−
{{#set: common name=putative Glutathione S-transferase}}
+
−
{{#set: common name=Glutathione S-transferase}}
+
−
{{#set: ec number=EC-2.5.1.18}}
+
−
{{#set: gene associated=Ec-13_002370|Ec-06_008030|Ec-13_000340|Ec-09_003670|Ec-27_000400|Ec-27_000390|Ec-00_008890|Ec-13_002360|Ec-18_001510|Ec-00_000320|Ec-06_002520|Ec-00_008380|Ec-00_008370|Ec-11_002590|Ec-00_008360|Ec-00_008870|Ec-24_001030|Ec-20_001950}}
+
−
{{#set: in pathway=PWY-7533}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:23, 21 March 2018

Reaction UROGENDECARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Uroporphyrinogen decarboxylase, chloroplast precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7766, heme biosynthesis IV (Gram-positive bacteria): PWY-7766
    • 1 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 6 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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