Difference between revisions of "PWY-5743"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5743 PWY-5743] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200795 TAX-...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5743 PWY-5743] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200795 TAX-200795]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 3-hydroxypropanoate cycle
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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* Synonym(s):
 
* Synonym(s):
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** D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
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** 3-hydroxypropionate/malyl-CoA cycle
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** β-hydroxypalmitoyl-acyl carrier protein dehydrase
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** 3-hydroxypropionate cycle
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** β-hydroxypalmitoyl thioester dehydratase
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** β-hydroxypalmityl-ACP dehydrase
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** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
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** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''11''' reactions in the full pathway
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** 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[2-Hexadecenoyl-ACPs]][c]
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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* With common name(s):
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** 7 associated gene(s):
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** 1 a (3R)-3-hydroxypalmitoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans hexadecenoyl-[acp][c]
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*** [[Ec-19_003040]]
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*** [[Ec-03_001890]]
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== Genes associated with this reaction  ==
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*** [[Ec-14_002460]]
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== Pathways  ==
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*** [[Ec-01_009720]]
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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*** [[Ec-01_010970]]
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** '''28''' reactions found over '''31''' reactions in the full pathway
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*** [[Ec-19_003230]]
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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*** [[Ec-20_002520]]
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** '''20''' reactions found over '''31''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
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* Category: [[gap-filling]]
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*** [[orthology-aragem]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* [[PROPIONYL-COA-CARBOXY-RXN]]
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*** Tool: [[meneco]]
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** 1 associated gene(s):
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**** Comment: [[added for gapfilling]]
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*** [[Ec-01_010970]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-6383]]
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** 2 associated gene(s):
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*** [[Ec-14_006530]]
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*** [[Ec-17_000320]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-MUT-RXN METHYLMALONYL-COA-MUT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8963 RXN-8963]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8964 RXN-8964]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8974 RXN-8974]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9086 RXN-9086]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9087 RXN-9087]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-200795}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04462 R04462]
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{{#set: common name=3-hydroxypropanoate cycle}}
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* UNIPROT:
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{{#set: common name=3-hydroxypropionate/malyl-CoA cycle|3-hydroxypropionate cycle}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/P07149 P07149]
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{{#set: total reaction=11}}
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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{{#set: completion rate=27.0}}
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: common name=D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase|β-hydroxypalmitoyl-acyl carrier protein dehydrase|β-hydroxypalmitoyl thioester dehydratase|β-hydroxypalmityl-ACP dehydrase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction comment=added for gapfilling}}
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Latest revision as of 19:28, 21 March 2018

Pathway PWY-5743

  • taxonomic range:
  • common name:
    • 3-hydroxypropanoate cycle
  • Synonym(s):
    • 3-hydroxypropionate/malyl-CoA cycle
    • 3-hydroxypropionate cycle

Reaction(s) found

3 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5743&oldid=27155"